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Aliases for GC11P086154 Gene

Subcategory (RNA class) for GC11P086154 Gene


Quality Score for this RNA gene is


Aliases for GC11P086154 Gene

No Aliases found

ORGUL Members for GC11P086154 Gene

No data available for External Ids for GC11P086154 Gene

Summaries for GC11P086154 Gene

GeneCards Summary for GC11P086154 Gene

GC11P086154 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC11P086154 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC11P086154 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11P086154 Gene

Genomics for GC11P086154 Gene

GeneHancer (GH) Regulatory Elements for GC11P086154 Gene

Promoters and enhancers for GC11P086154 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J086150 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.5 -1517 3.1 CC2D1A CBFA2T2 MLLT1 GTF2F1 TRIM24 ZNF639 SMARCA4 GMEB1 POLR2A DPF2 GC11P086154 RNU6-560P CCDC83 PICALM
GH11J086153 Enhancer 0.7 ENCODE dbSUPER 600.7 +0.4 426 0.1 SP1 RXRA RFX1 NR2F2 HNF4A ZNF24 GC11P086154 RNU6-560P LINC02695
GH11J086152 Enhancer 1.1 FANTOM5 dbSUPER 0.7 -4.7 -4714 0.2 CC2D1A CBFA2T2 ZNF148 MLLT1 GTF2F1 TRIM24 SMARCA4 MTA1 GMEB1 ARID2 EED GC11P086154 PICALM
GH11J086138 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 0.4 -10.9 -10928 8 CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 ZNF687 BACH1 TRIM24 RELA SP1 PICALM CCDC83 SYTL2 HIKESHI GC11P086154
GH11J086148 Enhancer 0.9 dbSUPER 0.7 -5.0 -4950 0.2 CBFA2T2 ZNF148 MLLT1 GTF2F1 SMARCA4 MTA1 GMEB1 ARID2 IKZF1 LEF1 PICALM GC11P086154
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC11P086154 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11P086154 Gene

Genomic Locations for GC11P086154 Gene
109 bases
Plus strand

Genomic View for GC11P086154 Gene

Genes around GC11P086154 on UCSC Golden Path with GeneCards custom track

GC11P086154 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11P086154 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11P086154 Gene

Proteins for GC11P086154 Gene

Post-translational modifications for GC11P086154 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11P086154 Gene

Domains & Families for GC11P086154 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11P086154 Gene

Function for GC11P086154 Gene

Phenotypes From GWAS Catalog for GC11P086154 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11P086154 Gene

Localization for GC11P086154 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11P086154 Gene

Pathways & Interactions for GC11P086154 Gene

PathCards logo

SuperPathways for GC11P086154 Gene

No Data Available

Interacting Proteins for GC11P086154 Gene

Gene Ontology (GO) - Biological Process for GC11P086154 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC11P086154 Gene

Drugs & Compounds for GC11P086154 Gene

No Compound Related Data Available

Transcripts for GC11P086154 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC11P086154 Gene

No ASD Table

Relevant External Links for GC11P086154 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC11P086154 Gene

Expression for GC11P086154 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11P086154 Gene

Orthologs for GC11P086154 Gene

No data available for Orthologs and Evolution for GC11P086154 Gene

Paralogs for GC11P086154 Gene

No data available for Paralogs for GC11P086154 Gene

Variants for GC11P086154 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11P086154 Gene

Disorders for GC11P086154 Gene

No disorders were found for GC11P086154 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11P086154 Gene

Publications for GC11P086154 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC11P086154 Gene

Products for GC11P086154 Gene

Sources for GC11P086154 Gene

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