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Aliases for GC11P066435 Gene

Subcategory (RNA class) for GC11P066435 Gene

snoRNA

Quality Score for this RNA gene is

15.2

Aliases for GC11P066435 Gene

No Aliases found

ORGUL Members for GC11P066435 Gene

No data available for External Ids for GC11P066435 Gene

Summaries for GC11P066435 Gene

GeneCards Summary for GC11P066435 Gene

GC11P066435 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC11P066435 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC11P066435

Additional gene information for GC11P066435 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11P066435 Gene

Genomics for GC11P066435 Gene

GeneHancer (GH) Regulatory Elements for GC11P066435 Gene

Promoters and enhancers for GC11P066435 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J066431 Enhancer 0.7 Ensembl 600.7 +0.1 136 2.2 IKZF1 ZNF512 REST HDAC1 ZNF24 ZNF316 SOX6 CTBP1 NFE2 HDAC2 ENSG00000201733 GC11P066435 DPP3 EIF1AD PCNX3 KDM2A RAD9A RBM14 RBM4 RPS6KB2
GH11J066437 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 +5.9 5885 2.1 ZNF652 SP1 ZFX ELF3 CTCF MNT SIX5 ZNF148 NKRF POLR2A MRPL11 CTSF EHBP1L1 RELA MAP3K11 GC11P066435 LOC100505524
GH11J066443 Enhancer 0.9 Ensembl ENCODE 0.4 +11.4 11436 3.2 PRDM1 SMARCC1 CEBPB CHD2 JUN RCOR1 JUND MAX MXI1 FOS ENSG00000255517 LOC100505524 GC11P066435 MRPL11
GH11J066448 Enhancer 0.5 Ensembl 0.4 +16.9 16936 3.4 CEBPA SCRT2 SCRT1 TEAD3 ACTN3 DPP3 ENSG00000255517 NPAS4 ENSG00000254510 RNU1-84P BRD9P1 CD248 MUS81 LOC100505524
GH11J066446 Enhancer 0.3 Ensembl 0.4 +14.1 14136 1 ZNF395 DPP3 ENSG00000255517 LOC100505524 GC11P066435 MRPL11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC11P066435 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11P066435 Gene

Genomic Locations for GC11P066435 Gene
chr11:66,432,765-66,432,902
(GRCh38/hg38)
Size:
138 bases
Orientation:
Plus strand

Genomic View for GC11P066435 Gene

Genes around GC11P066435 on UCSC Golden Path with GeneCards custom track

GC11P066435 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11P066435 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC11P066435 Gene

ORGUL Member Location for GC11P066435 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC11P066435 Gene

Proteins for GC11P066435 Gene

Post-translational modifications for GC11P066435 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11P066435 Gene

Domains & Families for GC11P066435 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11P066435 Gene

Function for GC11P066435 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11P066435 Gene

Localization for GC11P066435 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11P066435 Gene

Pathways & Interactions for GC11P066435 Gene

PathCards logo

SuperPathways for GC11P066435 Gene

No Data Available

Interacting Proteins for GC11P066435 Gene

Gene Ontology (GO) - Biological Process for GC11P066435 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11P066435 Gene

Drugs & Compounds for GC11P066435 Gene

No Compound Related Data Available

Transcripts for GC11P066435 Gene

fRNAdb Secondary structures for GC11P066435 Gene

  • FR176452
  • FR155066

Alternative Splicing Database (ASD) splice patterns (SP) for GC11P066435 Gene

No ASD Table

Relevant External Links for GC11P066435 Gene

GeneLoc Exon Structure for
GC11P066435

No data available for mRNA/cDNA for GC11P066435 Gene

Expression for GC11P066435 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11P066435 Gene

Orthologs for GC11P066435 Gene

No data available for Orthologs and Evolution for GC11P066435 Gene

Paralogs for GC11P066435 Gene

No data available for Paralogs for GC11P066435 Gene

Variants for GC11P066435 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11P066435 Gene

Disorders for GC11P066435 Gene

No disorders were found for GC11P066435 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11P066435 Gene

Publications for GC11P066435 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

No data available for External Links for GC11P066435 Gene

Products for GC11P066435 Gene

Sources for GC11P066435 Gene

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