Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC11P065653 Gene

Subcategory (RNA class) for GC11P065653 Gene

piRNA

Quality Score for this RNA gene is

24.2

Aliases for GC11P065653 Gene

No Aliases found

ORGUL Members for GC11P065653 Gene

No data available for External Ids for GC11P065653 Gene

Summaries for GC11P065653 Gene

GeneCards Summary for GC11P065653 Gene

GC11P065653 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC11P065653 Gene - the ORGUL cluster for this gene includes several descriptions:

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC11P065653

Additional gene information for GC11P065653 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11P065653 Gene

Genomics for GC11P065653 Gene

GeneHancer (GH) Regulatory Elements for GC11P065653 Gene

Promoters and enhancers for GC11P065653 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J065650 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.3 -1276 5.4 ZFX ELF3 NKRF MLLT1 GTF2F1 ZNF687 NFIB NCOA6 SP7 TRIM24 GC11P065653 GC11P065738 GC11P065739 GC11P065741 PIR54939 PIR32368 MAP3K11 EHBP1L1 EIF1AD PCNX3
GH11J065656 Enhancer 0.4 ENCODE dbSUPER 600.7 +1.9 1917 0.2 GC11P065653 GC11P065738 GC11P065741 PIR50881 RELA
GH11J065655 Enhancer 0.4 ENCODE dbSUPER 600.7 +1.6 1627 0.2 GC11P065653 GC11P065738 GC11P065741 PIR50881 RELA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC11P065653 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11P065653 Gene

Genomic Locations for GC11P065653 Gene
chr11:65,653,988-65,654,078
(GRCh38/hg38)
Size:
91 bases
Orientation:
Plus strand

Genomic View for GC11P065653 Gene

Genes around GC11P065653 on UCSC Golden Path with GeneCards custom track

GC11P065653 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11P065653 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC11P065653 Gene

ORGUL Member Location for GC11P065653 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC11P065653 Gene

Proteins for GC11P065653 Gene

Post-translational modifications for GC11P065653 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11P065653 Gene

Domains & Families for GC11P065653 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11P065653 Gene

Function for GC11P065653 Gene

Phenotypes From GWAS Catalog for GC11P065653 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11P065653 Gene

Localization for GC11P065653 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11P065653 Gene

Pathways & Interactions for GC11P065653 Gene

PathCards logo

SuperPathways for GC11P065653 Gene

No Data Available

Interacting Proteins for GC11P065653 Gene

Gene Ontology (GO) - Biological Process for GC11P065653 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11P065653 Gene

Drugs & Compounds for GC11P065653 Gene

No Compound Related Data Available

Transcripts for GC11P065653 Gene

fRNAdb Secondary structures for GC11P065653 Gene

  • FR035164
  • FR312326

Alternative Splicing Database (ASD) splice patterns (SP) for GC11P065653 Gene

No ASD Table

Relevant External Links for GC11P065653 Gene

GeneLoc Exon Structure for
GC11P065653

No data available for mRNA/cDNA for GC11P065653 Gene

Expression for GC11P065653 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11P065653 Gene

Orthologs for GC11P065653 Gene

No data available for Orthologs and Evolution for GC11P065653 Gene

Paralogs for GC11P065653 Gene

No data available for Paralogs for GC11P065653 Gene

Variants for GC11P065653 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11P065653 Gene

Disorders for GC11P065653 Gene

No disorders were found for GC11P065653 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11P065653 Gene

Publications for GC11P065653 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC11P065653 Gene

Products for GC11P065653 Gene

Sources for GC11P065653 Gene

Content
Loading form....