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Aliases for GC11P032081 Gene

Subcategory (RNA class) for GC11P032081 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC11P032081 Gene

No Aliases found

ORGUL Members for GC11P032081 Gene

No data available for External Ids for GC11P032081 Gene

Summaries for GC11P032081 Gene

GeneCards Summary for GC11P032081 Gene

GC11P032081 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC11P032081 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

View fRNAdb secondary structures for GC11P032081

Additional gene information for GC11P032081 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11P032081 Gene

Genomics for GC11P032081 Gene

GeneHancer (GH) Regulatory Elements for GC11P032081 Gene

Promoters and enhancers for GC11P032081 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J032080 Enhancer 0.8 Ensembl ENCODE 600.7 -0.5 -463 1.4 PRDM10 ZNF341 MNT ZBTB20 NFE2 POLR2A EBF1 MAX ENSG00000212551 GC11P032081 RCN1 ENSG00000254627 ENSG00000285283
GH11J032082 Enhancer 0.3 Ensembl 600.7 +1.1 1138 1 ZIC2 GC11P032081 ENSG00000212551 RCN1 EIF4A2P5 ENSG00000285283
GH11J032072 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -9.1 -9062 2.2 CTCF POLR2A USF1 ZBTB17 CREB1 RAD21 SMC3 ATF2 USF2 RCN1 LOC100506675 HNRNPA3P9 PAX6 ENSG00000254627 GC11P032081 ENSG00000285283
GH11J032068 Enhancer 0.5 Ensembl 0.4 -12.8 -12762 1.2 POLR2A PKNOX1 RFX1 FOSL1 RCN1 LOC100506675 ENSG00000254627 GC11P032081 ENSG00000285283
GH11J032065 Enhancer 0.2 Ensembl 0.4 -16.1 -16062 1 ENSG00000254627 RCN1 LOC100506675 GC11P032081 ENSG00000285283
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC11P032081 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11P032081 Gene

Genomic Locations for GC11P032081 Gene
chr11:32,081,763-32,081,972
(GRCh38/hg38)
Size:
210 bases
Orientation:
Plus strand

Genomic View for GC11P032081 Gene

Genes around GC11P032081 on UCSC Golden Path with GeneCards custom track

GC11P032081 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11P032081 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC11P032081 Gene

ORGUL Member Location for GC11P032081 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC11P032081 Gene

Proteins for GC11P032081 Gene

Post-translational modifications for GC11P032081 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11P032081 Gene

Domains & Families for GC11P032081 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11P032081 Gene

Function for GC11P032081 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11P032081 Gene

Localization for GC11P032081 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11P032081 Gene

Pathways & Interactions for GC11P032081 Gene

PathCards logo

SuperPathways for GC11P032081 Gene

No Data Available

Interacting Proteins for GC11P032081 Gene

Gene Ontology (GO) - Biological Process for GC11P032081 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11P032081 Gene

Drugs & Compounds for GC11P032081 Gene

No Compound Related Data Available

Transcripts for GC11P032081 Gene

fRNAdb Secondary structures for GC11P032081 Gene

  • FR014441
  • FR406631

Alternative Splicing Database (ASD) splice patterns (SP) for GC11P032081 Gene

No ASD Table

Relevant External Links for GC11P032081 Gene

GeneLoc Exon Structure for
GC11P032081

No data available for mRNA/cDNA for GC11P032081 Gene

Expression for GC11P032081 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11P032081 Gene

Orthologs for GC11P032081 Gene

No data available for Orthologs and Evolution for GC11P032081 Gene

Paralogs for GC11P032081 Gene

No data available for Paralogs for GC11P032081 Gene

Variants for GC11P032081 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11P032081 Gene

Disorders for GC11P032081 Gene

No disorders were found for GC11P032081 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11P032081 Gene

Publications for GC11P032081 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

No data available for External Links for GC11P032081 Gene

Products for GC11P032081 Gene

Sources for GC11P032081 Gene

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