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Aliases for GC11P005064 Gene

Subcategory (RNA class) for GC11P005064 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for GC11P005064 Gene

No Aliases found

No data available for External Ids for GC11P005064 Gene

Summaries for GC11P005064 Gene

GeneCards Summary for GC11P005064 Gene

GC11P005064 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC11P005064 Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

Additional gene information for GC11P005064 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11P005064 Gene

Genomics for GC11P005064 Gene

GeneHancer (GH) Regulatory Elements for GC11P005064 Gene

Promoters and enhancers for GC11P005064 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J005124 Enhancer 1 Ensembl ENCODE 0.2 +60.0 60015 0.4 CC2D1A CTCF CEBPG RAD21 ARID2 CEBPA ZNF143 REST PKNOX1 TRIM22 OR52A4P ENSG00000236897 GC11P005064
GH11J005087 Enhancer 0.6 ENCODE 0.3 +23.3 23299 0.4 SMARCA4 ZNF316 SOX6 DPF2 TCF12 TAL1 TEAD4 EMSY CBFA2T3 OR52E3P OR52S1P GC11P005064
GH11J005107 Enhancer 0.7 Ensembl 0.3 +43.3 43315 0.2 CBFA2T2 TRIM24 SMARCA4 MTA1 DPF2 HDAC1 ZNF316 EP300 SOX6 TCF12 ENSG00000236897 OR52A5 OR51M1 OR51B5 OR52J1P GC11P005064
GH11J005234 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 0.1 +170.4 170419 1.1 CBFA2T2 SMARCA4 DPF2 ZNF512 PKNOX1 ZNF24 LEF1 HDAC1 EP300 SOX6 HBB HBG2 HBBP1 HBD GC11P005064
GH11J005129 Enhancer 0.8 Ensembl 0.2 +65.6 65570 0.5 TRIM24 SMARCA4 DPF2 ATF1 GTF2E2 PKNOX1 LEF1 HDAC1 ZNF24 EP300 HNRNPA1P53 OR52A4P OR52A5 GC11P005064
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC11P005064 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11P005064 Gene

Genomic Locations for GC11P005064 Gene
chr11:5,064,186-5,390,711
(GRCh38/hg38)
Size:
326,526 bases
Orientation:
Plus strand

Genomic View for GC11P005064 Gene

Genes around GC11P005064 on UCSC Golden Path with GeneCards custom track

GC11P005064 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11P005064 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC11P005064 Gene

ORGUL Member Location for GC11P005064 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC11P005064 Gene

Proteins for GC11P005064 Gene

Post-translational modifications for GC11P005064 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11P005064 Gene

Domains & Families for GC11P005064 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11P005064 Gene

Function for GC11P005064 Gene

Phenotypes From GWAS Catalog for GC11P005064 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11P005064 Gene

Localization for GC11P005064 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11P005064 Gene

Pathways & Interactions for GC11P005064 Gene

PathCards logo

SuperPathways for GC11P005064 Gene

No Data Available

Interacting Proteins for GC11P005064 Gene

Gene Ontology (GO) - Biological Process for GC11P005064 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11P005064 Gene

Drugs & Compounds for GC11P005064 Gene

No Compound Related Data Available

Transcripts for GC11P005064 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC11P005064 Gene

No ASD Table

Relevant External Links for GC11P005064 Gene

GeneLoc Exon Structure for
GC11P005064

No data available for mRNA/cDNA for GC11P005064 Gene

Expression for GC11P005064 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11P005064 Gene

Orthologs for GC11P005064 Gene

No data available for Orthologs and Evolution for GC11P005064 Gene

Paralogs for GC11P005064 Gene

No data available for Paralogs for GC11P005064 Gene

Variants for GC11P005064 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11P005064 Gene

Disorders for GC11P005064 Gene

No disorders were found for GC11P005064 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11P005064 Gene

Publications for GC11P005064 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Genomic organization of the KCNQ1 K+ channel gene and identification of C-terminal mutations in the long-QT syndrome. (PMID: 10024302) Neyroud N … Guicheney P (Circulation research 1999) 1

No data available for External Links for GC11P005064 Gene

Products for GC11P005064 Gene

Sources for GC11P005064 Gene

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