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Aliases for GC11M130115 Gene

Subcategory (RNA class) for GC11M130115 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC11M130115 Gene

No Aliases found

ORGUL Members for GC11M130115 Gene

No data available for External Ids for GC11M130115 Gene

Summaries for GC11M130115 Gene

GeneCards Summary for GC11M130115 Gene

GC11M130115 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC11M130115 Gene

  • U4_snRNA: U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6.

Additional gene information for GC11M130115 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11M130115 Gene

Genomics for GC11M130115 Gene

GeneHancer (GH) Regulatory Elements for GC11M130115 Gene

Promoters and enhancers for GC11M130115 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J130109 Enhancer 0.7 dbSUPER 650.7 +1.5 1508 7.3 SCRT1 MEIS2 PKNOX1 FOXA2 RXRA HLF RAD21 ATF2 FOXA1 SP1 ENSG00000274197 GC11M130115 APLP2 GC11P130107
GH11J130118 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 -4.7 -4660 1.7 GATAD2A SAP130 CEBPB JUNB EBF1 CEBPG ZNF644 ATF2 RELA CEBPA NFRKB LINC00167 PRDM10 APLP2 ST14 ENSG00000274197 GC11M130115 PIR61423
GH11J130120 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.1 -11050 10.3 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 ATF7 FOS APLP2 PRDM10 LINC00167 NFRKB ST14 GC11M130115 ENSG00000274197 PIR61423
GH11J130132 Enhancer 0.9 ENCODE dbSUPER 0.4 -18.1 -18106 0.2 CTCF ARID4B BACH1 ZNF384 RAD21 RFX5 CC2D1A ZNF316 ARID2 SMC3 APLP2 PIR61423 ENSG00000274197 GC11M130115
GH11J130134 Enhancer 0.8 ENCODE dbSUPER 0.4 -17.8 -17836 0.1 CTCF ARID4B MAFG ZNF384 PPARG RAD21 CC2D1A ZNF143 KDM1A NFE2 PIR61423 ENSG00000274197 GC11M130115 APLP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC11M130115 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11M130115 Gene

Genomic Locations for GC11M130115 Gene
chr11:130,114,208-130,114,335
(GRCh38/hg38)
Size:
128 bases
Orientation:
Minus strand

Genomic View for GC11M130115 Gene

Genes around GC11M130115 on UCSC Golden Path with GeneCards custom track

GC11M130115 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11M130115 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11M130115 Gene

Proteins for GC11M130115 Gene

Post-translational modifications for GC11M130115 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11M130115 Gene

Domains & Families for GC11M130115 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11M130115 Gene

Function for GC11M130115 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11M130115 Gene

Localization for GC11M130115 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11M130115 Gene

Pathways & Interactions for GC11M130115 Gene

SuperPathways for GC11M130115 Gene

No Data Available

Interacting Proteins for GC11M130115 Gene

Gene Ontology (GO) - Biological Process for GC11M130115 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11M130115 Gene

Drugs & Compounds for GC11M130115 Gene

No Compound Related Data Available

Transcripts for GC11M130115 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC11M130115 Gene

No ASD Table

Relevant External Links for GC11M130115 Gene

GeneLoc Exon Structure for
GC11M130115

No data available for mRNA/cDNA for GC11M130115 Gene

Expression for GC11M130115 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11M130115 Gene

Orthologs for GC11M130115 Gene

No data available for Orthologs and Evolution for GC11M130115 Gene

Paralogs for GC11M130115 Gene

No data available for Paralogs for GC11M130115 Gene

Variants for GC11M130115 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11M130115 Gene

Disorders for GC11M130115 Gene

No disorders were found for GC11M130115 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11M130115 Gene

Publications for GC11M130115 Gene

  1. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. (PMID: 11163207) Vidovic I … Ficner R (Molecular cell 2000) 1
  2. A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles. (PMID: 9452384) Raghunathan PL … Guthrie C (Science (New York, N.Y.) 1998) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC11M130115 Gene

Sources for GC11M130115 Gene

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