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Aliases for GC11M125348 Gene

Subcategory (RNA class) for GC11M125348 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC11M125348 Gene

No Aliases found

ORGUL Members for GC11M125348 Gene

No data available for External Ids for GC11M125348 Gene

Summaries for GC11M125348 Gene

GeneCards Summary for GC11M125348 Gene

GC11M125348 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC11M125348 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

View fRNAdb secondary structures for GC11M125348

Additional gene information for GC11M125348 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11M125348 Gene

Genomics for GC11M125348 Gene

GeneHancer (GH) Regulatory Elements for GC11M125348 Gene

Promoters and enhancers for GC11M125348 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I125348 Enhancer 0.8 ENCODE dbSUPER 550.8 -0.2 -156 1.6 CTCF L3MBTL2 TRIM22 REST MNT ZNF2 RAD21 POLR2A ZNF143 SMC3 GC11M125348 RNU6-321P GC11P125369 PKNOX2
GH11I125347 Enhancer 0.4 ENCODE dbSUPER 550.8 +0.9 910 0.1 GC11M125348 RNU6-321P GC11M125336 PKNOX2
GH11I125342 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 +3.6 3612 5.3 CTCF KLF1 RB1 ZNF449 ZIC2 RAD21 GATA3 POLR2A ZNF366 ZNF143 LOC105369549 RNU6-321P GC11M125348 GC11M125336 PKNOX2
GH11I125355 Enhancer 0.7 dbSUPER 0.4 -8.4 -8379 3 BCOR CTCF PKNOX1 ETV1 ZNF384 EBF1 ZBTB40 BATF ZIC2 RAD21 GC11M125348 GC11P125369 PKNOX2
GH11I125337 Enhancer 0.6 ENCODE dbSUPER 0.4 +9.4 9353 2.6 CEBPB REST RNU6-321P LOC105369549 ENSG00000255475 GC11M125336 GC11M125348 PKNOX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC11M125348 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11M125348 Gene

Genomic Locations for GC11M125348 Gene
chr11:125,348,294-125,348,480
(GRCh38/hg38)
Size:
187 bases
Orientation:
Minus strand

Genomic View for GC11M125348 Gene

Genes around GC11M125348 on UCSC Golden Path with GeneCards custom track

GC11M125348 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11M125348 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC11M125348 Gene

ORGUL Member Location for GC11M125348 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC11M125348 Gene

Proteins for GC11M125348 Gene

Post-translational modifications for GC11M125348 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11M125348 Gene

Domains & Families for GC11M125348 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11M125348 Gene

Function for GC11M125348 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11M125348 Gene

Localization for GC11M125348 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11M125348 Gene

Pathways & Interactions for GC11M125348 Gene

SuperPathways for GC11M125348 Gene

No Data Available

Interacting Proteins for GC11M125348 Gene

Gene Ontology (GO) - Biological Process for GC11M125348 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11M125348 Gene

Drugs & Compounds for GC11M125348 Gene

No Compound Related Data Available

Transcripts for GC11M125348 Gene

fRNAdb Secondary structures for GC11M125348 Gene

  • FR190097
  • FR232511

Alternative Splicing Database (ASD) splice patterns (SP) for GC11M125348 Gene

No ASD Table

Relevant External Links for GC11M125348 Gene

GeneLoc Exon Structure for
GC11M125348

No data available for mRNA/cDNA for GC11M125348 Gene

Expression for GC11M125348 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11M125348 Gene

Orthologs for GC11M125348 Gene

No data available for Orthologs and Evolution for GC11M125348 Gene

Paralogs for GC11M125348 Gene

No data available for Paralogs for GC11M125348 Gene

Variants for GC11M125348 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11M125348 Gene

Disorders for GC11M125348 Gene

No disorders were found for GC11M125348 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11M125348 Gene

Publications for GC11M125348 Gene

  1. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  2. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC11M125348 Gene

Sources for GC11M125348 Gene

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