Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC11M108232 Gene

Subcategory (RNA class) for GC11M108232 Gene

Y RNA

Quality Score for this RNA gene is

2

Aliases for GC11M108232 Gene

No Aliases found

ORGUL Members for GC11M108232 Gene

No data available for External Ids for GC11M108232 Gene

Summaries for GC11M108232 Gene

GeneCards Summary for GC11M108232 Gene

GC11M108232 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for GC11M108232 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC11M108232 Gene

Genomics for GC11M108232 Gene

GeneHancer (GH) Regulatory Elements for GC11M108232 Gene

Promoters and enhancers for GC11M108232 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I108219 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.8 +3.7 3743 12.2 MLX DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 NFYC NPAT ATM ACAT1 DDX10 KDELC2 CWF19L2 ENSG00000255467 C11orf65 ENSG00000206967 GC11M108232
GH11I108233 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -9.0 -9001 11.1 FOXA2 BATF IRF4 ZNF48 RARA SMARCC2 ATF7 ETV6 BCLAF1 CREM ACAT1 ATM ENSG00000255467 DDX10 C11orf65 KDELC2 ENSG00000206967 GC11M108232 PIR35860
GH11I108246 Enhancer 0.6 dbSUPER 0.4 -17.5 -17489 1.5 PAF1 CEBPB MAFG CEBPG ZNF316 MAFF EMSY MAFK ACAT1 NPAT ATM ENSG00000255467 DDX10 C11orf65 GC11M108232 ENSG00000206967 PIR35860
GH11I108245 Enhancer 0.4 dbSUPER 0.4 -15.8 -15817 0.8 ZNF384 CEBPG ACAT1 NPAT ATM ENSG00000255467 DDX10 GC11M108232 ENSG00000206967 PIR35860
GH11I108251 Enhancer 0.4 dbSUPER 0.3 -23.0 -23020 2.2 PAF1 FOSL1 ACAT1 NPAT ATM ENSG00000255467 DDX10 GC11M108232 ENSG00000206967 PIR35860
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC11M108232 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11M108232 Gene

Genomic Locations for GC11M108232 Gene
chr11:108,229,504-108,229,604
(GRCh38/hg38)
Size:
101 bases
Orientation:
Minus strand

Genomic View for GC11M108232 Gene

Genes around GC11M108232 on UCSC Golden Path with GeneCards custom track

GC11M108232 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11M108232 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11M108232 Gene

Proteins for GC11M108232 Gene

Post-translational modifications for GC11M108232 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11M108232 Gene

Domains & Families for GC11M108232 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11M108232 Gene

Function for GC11M108232 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11M108232 Gene

Localization for GC11M108232 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11M108232 Gene

Pathways & Interactions for GC11M108232 Gene

SuperPathways for GC11M108232 Gene

No Data Available

Interacting Proteins for GC11M108232 Gene

Gene Ontology (GO) - Biological Process for GC11M108232 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11M108232 Gene

Drugs & Compounds for GC11M108232 Gene

No Compound Related Data Available

Transcripts for GC11M108232 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC11M108232 Gene

No ASD Table

Relevant External Links for GC11M108232 Gene

GeneLoc Exon Structure for
GC11M108232

No data available for mRNA/cDNA for GC11M108232 Gene

Expression for GC11M108232 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11M108232 Gene

Orthologs for GC11M108232 Gene

No data available for Orthologs and Evolution for GC11M108232 Gene

Paralogs for GC11M108232 Gene

No data available for Paralogs for GC11M108232 Gene

Variants for GC11M108232 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11M108232 Gene

Disorders for GC11M108232 Gene

No disorders were found for GC11M108232 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11M108232 Gene

Publications for GC11M108232 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for GC11M108232 Gene

Sources for GC11M108232 Gene

Content
Loading form....