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Aliases for GC11M083042 Gene

Subcategory (RNA class) for GC11M083042 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC11M083042 Gene

No Aliases found

ORGUL Members for GC11M083042 Gene

No data available for External Ids for GC11M083042 Gene

Summaries for GC11M083042 Gene

GeneCards Summary for GC11M083042 Gene

GC11M083042 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC11M083042 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC11M083042 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11M083042 Gene

Genomics for GC11M083042 Gene

GeneHancer (GH) Regulatory Elements for GC11M083042 Gene

Promoters and enhancers for GC11M083042 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J083042 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -2.7 -2676 2.9 KLF1 JUN FEZF1 HIC1 GTF3C2 FOSL1 GATA3 ELK1 POLR2A FOSL2 PCF11 RAB30 ENSG00000254676 ENSG00000254551 RAB30-AS1 PRCP GC11M083042 SNORA70E
GH11J083068 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.3 -30.1 -30122 5.5 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZNF610 GLIS1 RCOR2 NBN RAB30-AS1 RAB30 LOC100506282 ENSG00000254676 PCF11 SNORA70E ENSG00000254522 ENSG00000254698 ENSG00000255503 GC11M083042
GH11J083050 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -11.1 -11103 3.8 HDAC1 FOXA2 ATF1 BRCA1 RFX5 RCOR1 FOS ATF7 IKZF2 RUNX3 PRCP DDIAS RAB30-AS1 RAB30 GC11M083042 SNORA70E
GH11J083060 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -22.5 -22513 6.5 HDGF SMAD1 STAT5A BMI1 BATF KLF5 IRF4 RARA ZNF335 ZNF143 PCF11 DDIAS ENSG00000254676 ENSG00000254551 RAB30 RAB30-AS1 GC11M083042 SNORA70E
GH11J083054 Enhancer 0.9 ENCODE dbSUPER 0.4 -13.7 -13689 1.2 EBF1 ZNF507 YY1 CTBP1 GATA3 FOSL2 FOS RUNX3 SMARCE1 DPF2 PRCP DDIAS RAB30 RAB30-AS1 GC11M083042 SNORA70E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC11M083042 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11M083042 Gene

Genomic Locations for GC11M083042 Gene
chr11:83,041,463-83,041,598
(GRCh38/hg38)
Size:
136 bases
Orientation:
Minus strand

Genomic View for GC11M083042 Gene

Genes around GC11M083042 on UCSC Golden Path with GeneCards custom track

GC11M083042 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11M083042 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11M083042 Gene

Proteins for GC11M083042 Gene

Post-translational modifications for GC11M083042 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11M083042 Gene

Domains & Families for GC11M083042 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11M083042 Gene

Function for GC11M083042 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11M083042 Gene

Localization for GC11M083042 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11M083042 Gene

Pathways & Interactions for GC11M083042 Gene

SuperPathways for GC11M083042 Gene

No Data Available

Interacting Proteins for GC11M083042 Gene

Gene Ontology (GO) - Biological Process for GC11M083042 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11M083042 Gene

Drugs & Compounds for GC11M083042 Gene

No Compound Related Data Available

Transcripts for GC11M083042 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC11M083042 Gene

No ASD Table

Relevant External Links for GC11M083042 Gene

GeneLoc Exon Structure for
GC11M083042

No data available for mRNA/cDNA for GC11M083042 Gene

Expression for GC11M083042 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11M083042 Gene

Orthologs for GC11M083042 Gene

No data available for Orthologs and Evolution for GC11M083042 Gene

Paralogs for GC11M083042 Gene

No data available for Paralogs for GC11M083042 Gene

Variants for GC11M083042 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11M083042 Gene

Disorders for GC11M083042 Gene

No disorders were found for GC11M083042 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11M083042 Gene

Publications for GC11M083042 Gene

  1. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  2. Pseudouridine in RNA: what, where, how, and why. (PMID: 10902565) Charette M … Gray MW (IUBMB life 2000) 1

Products for GC11M083042 Gene

Sources for GC11M083042 Gene

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