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Aliases for GC11M062924 Gene

Subcategory (RNA class) for GC11M062924 Gene

snoRNA

Quality Score for this RNA gene is

4

Aliases for GC11M062924 Gene

No Aliases found

ORGUL Members for GC11M062924 Gene

No data available for External Ids for GC11M062924 Gene

Summaries for GC11M062924 Gene

GeneCards Summary for GC11M062924 Gene

GC11M062924 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC11M062924 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC11M062924 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11M062924 Gene

Genomics for GC11M062924 Gene

GeneHancer (GH) Regulatory Elements for GC11M062924 Gene

Promoters and enhancers for GC11M062924 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I062851 Enhancer 1.1 Ensembl ENCODE 550.8 +1.2 1178 1.6 HNRNPUL1 PKNOX1 SMAD1 FOXA2 ARNT NSD2 TCF12 POLR2B E2F8 PAF1 GC11M062921 GC11M062922 GC11M062924 SNORD22 SNORD30 SNORD31 SNHG1 NXF1 UBXN1 CSKMT
GH11I062852 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.8 -2802 5.9 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SNHG1 SLC3A2 ENSG00000278527 GC11M062911 GC11M062919 GC11M062920 GC11M062923 GC11M062925 GC11M062930 SNORD25
GH11I062850 Enhancer 0.8 Ensembl ENCODE 0.8 +2.4 2434 0.4 SCRT1 CTCF PHF21A PRDM6 POLR2A SCRT2 TARDBP KDM1A PRDM10 GC11M062924 SNORD22 GC11M062842 RNU2-2P WDR74
GH11I062853 Enhancer 0.4 ENCODE 0.8 +2.9 2871 0.1 PRDM6 POLR2A GC11M062924 SNORD22 RNU2-2P WDR74 GC11M062842
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC11M062924 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11M062924 Gene

Genomic Locations for GC11M062924 Gene
chr11:62,852,909-62,853,035
(GRCh38/hg38)
Size:
127 bases
Orientation:
Minus strand

Genomic View for GC11M062924 Gene

Genes around GC11M062924 on UCSC Golden Path with GeneCards custom track

GC11M062924 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11M062924 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11M062924 Gene

Proteins for GC11M062924 Gene

Post-translational modifications for GC11M062924 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11M062924 Gene

Domains & Families for GC11M062924 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11M062924 Gene

Function for GC11M062924 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11M062924 Gene

Localization for GC11M062924 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11M062924 Gene

Pathways & Interactions for GC11M062924 Gene

SuperPathways for GC11M062924 Gene

No Data Available

Interacting Proteins for GC11M062924 Gene

Gene Ontology (GO) - Biological Process for GC11M062924 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11M062924 Gene

Drugs & Compounds for GC11M062924 Gene

No Compound Related Data Available

Transcripts for GC11M062924 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC11M062924 Gene

No ASD Table

Relevant External Links for GC11M062924 Gene

GeneLoc Exon Structure for
GC11M062924

No data available for mRNA/cDNA for GC11M062924 Gene

Expression for GC11M062924 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11M062924 Gene

Orthologs for GC11M062924 Gene

No data available for Orthologs and Evolution for GC11M062924 Gene

Paralogs for GC11M062924 Gene

No data available for Paralogs for GC11M062924 Gene

Variants for GC11M062924 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11M062924 Gene

Disorders for GC11M062924 Gene

No disorders were found for GC11M062924 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11M062924 Gene

Publications for GC11M062924 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 1
  4. Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. (PMID: 7985025) Tycowski KT … Steitz JA (Science (New York, N.Y.) 1994) 1
  5. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K … Steitz JA (The EMBO journal 1989) 1

Products for GC11M062924 Gene

Sources for GC11M062924 Gene

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