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Aliases for GC11M062842 Gene

Subcategory (RNA class) for GC11M062842 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC11M062842 Gene

No Aliases found

ORGUL Members for GC11M062842 Gene

No data available for External Ids for GC11M062842 Gene

Summaries for GC11M062842 Gene

GeneCards Summary for GC11M062842 Gene

GC11M062842 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC11M062842 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC11M062842 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11M062842 Gene

Genomics for GC11M062842 Gene

GeneHancer (GH) Regulatory Elements for GC11M062842 Gene

Promoters and enhancers for GC11M062842 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062838 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 650.7 +1.0 963 4.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 WDR74 GC11M062842 RNU2-2P NXF1 CSKMT INTS5 SNHG1 UBXN1 MTA2 GANAB
GH11J062851 Enhancer 1.1 Ensembl ENCODE 0.4 -10.0 -10048 1.6 HNRNPUL1 PKNOX1 SMAD1 FOXA2 ARNT TCF12 POLR2B E2F8 PAF1 REST GC11M062932 GC11M062933 GC11M062936 SNORD22 SNORD30 SNORD31 SNHG1 NXF1 UBXN1 CSKMT
GH11J062850 Enhancer 0.8 Ensembl ENCODE 0.4 -8.8 -8792 0.4 SCRT1 CTCF PHF21A PRDM6 POLR2A MYNN SCRT2 TARDBP PRDM10 KDM1A GC11M062936 SNORD22 GC11M062842 RNU2-2P WDR74
GH11J062853 Enhancer 0.4 ENCODE 0.4 -8.4 -8355 0.1 PRDM6 POLR2A GC11M062936 SNORD22 WDR74 RNU2-2P GC11M062842
GH11J062837 Enhancer 0.2 Ensembl 0.7 +3.9 3908 0.2 GC11M062842 RNU2-2P WDR74 TEX54
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC11M062842 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11M062842 Gene

Genomic Locations for GC11M062842 Gene
chr11:62,841,618-62,841,809
(GRCh38/hg38)
Size:
192 bases
Orientation:
Minus strand

Genomic View for GC11M062842 Gene

Genes around GC11M062842 on UCSC Golden Path with GeneCards custom track

GC11M062842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11M062842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11M062842 Gene

Proteins for GC11M062842 Gene

Post-translational modifications for GC11M062842 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11M062842 Gene

Domains & Families for GC11M062842 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11M062842 Gene

Function for GC11M062842 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11M062842 Gene

Localization for GC11M062842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11M062842 Gene

Pathways & Interactions for GC11M062842 Gene

SuperPathways for GC11M062842 Gene

No Data Available

Interacting Proteins for GC11M062842 Gene

Gene Ontology (GO) - Biological Process for GC11M062842 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11M062842 Gene

Drugs & Compounds for GC11M062842 Gene

No Compound Related Data Available

Transcripts for GC11M062842 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC11M062842 Gene

No ASD Table

Relevant External Links for GC11M062842 Gene

GeneLoc Exon Structure for
GC11M062842

No data available for mRNA/cDNA for GC11M062842 Gene

Expression for GC11M062842 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11M062842 Gene

Orthologs for GC11M062842 Gene

No data available for Orthologs and Evolution for GC11M062842 Gene

Paralogs for GC11M062842 Gene

No data available for Paralogs for GC11M062842 Gene

Variants for GC11M062842 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11M062842 Gene

Disorders for GC11M062842 Gene

No disorders were found for GC11M062842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11M062842 Gene

Publications for GC11M062842 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC11M062842 Gene

Sources for GC11M062842 Gene

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