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Aliases for GC11M019401 Gene

Subcategory (RNA class) for GC11M019401 Gene

rRNA

Quality Score for this RNA gene is

15

Aliases for GC11M019401 Gene

No Aliases found

ORGUL Members for GC11M019401 Gene

No data available for External Ids for GC11M019401 Gene

Summaries for GC11M019401 Gene

GeneCards Summary for GC11M019401 Gene

GC11M019401 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC11M019401 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC11M019401 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11M019401 Gene

Genomics for GC11M019401 Gene

GeneHancer (GH) Regulatory Elements for GC11M019401 Gene

Promoters and enhancers for GC11M019401 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019398 Enhancer 0.7 ENCODE 0.7 +3.0 3049 1.2 MAX FEZF1 RAD21 YY1 HIC1 HNF4G ATF7 MAFK RXRA REST NAV2 GC11M019401 RNA5SP335 NAV2-IT1
GH11J019418 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -17.4 -17404 2.4 PKNOX1 FOXA2 CLOCK NEUROD1 SIN3A RAD21 YY1 E2F8 EGR1 FOS NAV2 RNA5SP335 GC11M019401 NAV2-AS5
GH11J019441 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.3 -40.2 -40216 1.7 PKNOX1 SMAD1 ARNT IRF4 ZNF766 CBX5 ZNF143 ZNF207 FOS ZNF263 SPTY2D1 ENSG00000256361 TSG101 RNA5SP335 GC11M019401 NAV2-AS5 NAV2
GH11J019432 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -30.8 -30822 1.3 HDGF NFIB RB1 NEUROD1 FEZF1 GLI4 KLF5 IRF4 RFX5 ZNF143 NAV2-AS4 NAV2 GC11M019401 RNA5SP335 NAV2-AS5
GH11J019389 Enhancer 0.7 ENCODE 0.4 +11.9 11902 1.9 NCOA3 PKNOX1 FOXA2 MAX ZIC2 RAD21 YY1 GATA3 EGR1 HNF4G NAV2-AS4 HTATIP2 NAV2-IT1 RNA5SP335 GC11M019401 NAV2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC11M019401 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11M019401 Gene

Genomic Locations for GC11M019401 Gene
chr11:19,401,871-19,401,981
(GRCh38/hg38)
Size:
111 bases
Orientation:
Minus strand

Genomic View for GC11M019401 Gene

Genes around GC11M019401 on UCSC Golden Path with GeneCards custom track

GC11M019401 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11M019401 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11M019401 Gene

Proteins for GC11M019401 Gene

Post-translational modifications for GC11M019401 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11M019401 Gene

Domains & Families for GC11M019401 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11M019401 Gene

Function for GC11M019401 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11M019401 Gene

Localization for GC11M019401 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11M019401 Gene

Pathways & Interactions for GC11M019401 Gene

SuperPathways for GC11M019401 Gene

No Data Available

Interacting Proteins for GC11M019401 Gene

Gene Ontology (GO) - Biological Process for GC11M019401 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11M019401 Gene

Drugs & Compounds for GC11M019401 Gene

No Compound Related Data Available

Transcripts for GC11M019401 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC11M019401 Gene

No ASD Table

Relevant External Links for GC11M019401 Gene

GeneLoc Exon Structure for
GC11M019401

No data available for mRNA/cDNA for GC11M019401 Gene

Expression for GC11M019401 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11M019401 Gene

Orthologs for GC11M019401 Gene

No data available for Orthologs and Evolution for GC11M019401 Gene

Paralogs for GC11M019401 Gene

No data available for Paralogs for GC11M019401 Gene

Variants for GC11M019401 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11M019401 Gene

Disorders for GC11M019401 Gene

No disorders were found for GC11M019401 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11M019401 Gene

Publications for GC11M019401 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC11M019401 Gene

Sources for GC11M019401 Gene

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