Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC10M126780 Gene

Subcategory (RNA class) for GC10M126780 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC10M126780 Gene

No Aliases found

ORGUL Members for GC10M126780 Gene

No data available for External Ids for GC10M126780 Gene

Summaries for GC10M126780 Gene

GeneCards Summary for GC10M126780 Gene

GC10M126780 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC10M126780 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC10M126780 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10M126780 Gene

Genomics for GC10M126780 Gene

GeneHancer (GH) Regulatory Elements for GC10M126780 Gene

Promoters and enhancers for GC10M126780 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I126749 Enhancer 0.6 ENCODE 0.3 +30.5 30547 0.2 CTCF ZNF654 BACH1 REST ZNF501 ZNF2 RAD21 MAFF ZNF143 SMC3 ENSG00000199321 GC10M126780 C10orf90
GH10I126786 Enhancer 0.3 ENCODE 0.4 -7.7 -7713 1.3 MNT DOCK1 C10orf90 ENSG00000199321 GC10M126780 LOC105378550
GH10I126754 Enhancer 0.3 ENCODE 0.3 +24.2 24235 1.5 GATA3 UROS GC10M126780 ENSG00000199321 C10orf90
GH10I126686 Enhancer 0.4 ENCODE dbSUPER 0.2 +92.3 92284 1.3 C10orf90 ENSG00000199321 GC10M126780
GH10I126902 Enhancer 0.7 ENCODE 0.1 -122.6 -122553 0.2 CTCF PKNOX1 ESRRA NFIB MAX SIN3A RAD21 RFX5 CTBP1 SCRT2 GC10M126899 LOC105378550 ENSG00000199321 GC10M126780
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC10M126780 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC10M126780 Gene

Genomic Locations for GC10M126780 Gene
chr10:126,779,701-126,779,774
(GRCh38/hg38)
Size:
74 bases
Orientation:
Minus strand

Genomic View for GC10M126780 Gene

Genes around GC10M126780 on UCSC Golden Path with GeneCards custom track

GC10M126780 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10M126780 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10M126780 Gene

Proteins for GC10M126780 Gene

Post-translational modifications for GC10M126780 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10M126780 Gene

Domains & Families for GC10M126780 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10M126780 Gene

Function for GC10M126780 Gene

Phenotypes From GWAS Catalog for GC10M126780 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10M126780 Gene

Localization for GC10M126780 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC10M126780 Gene

Pathways & Interactions for GC10M126780 Gene

SuperPathways for GC10M126780 Gene

No Data Available

Interacting Proteins for GC10M126780 Gene

Gene Ontology (GO) - Biological Process for GC10M126780 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10M126780 Gene

Drugs & Compounds for GC10M126780 Gene

No Compound Related Data Available

Transcripts for GC10M126780 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10M126780 Gene

No ASD Table

Relevant External Links for GC10M126780 Gene

GeneLoc Exon Structure for
GC10M126780

No data available for mRNA/cDNA for GC10M126780 Gene

Expression for GC10M126780 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10M126780 Gene

Orthologs for GC10M126780 Gene

No data available for Orthologs and Evolution for GC10M126780 Gene

Paralogs for GC10M126780 Gene

No data available for Paralogs for GC10M126780 Gene

Variants for GC10M126780 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC10M126780 Gene

Disorders for GC10M126780 Gene

No disorders were found for GC10M126780 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10M126780 Gene

Publications for GC10M126780 Gene

  1. Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro. (PMID: 12215523) Galardi S … Bozzoni I (Molecular and cellular biology 2002) 1
  2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 1

Products for GC10M126780 Gene

Sources for GC10M126780 Gene

Content
Loading form....