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Aliases for GC10M125891 Gene

Subcategory (RNA class) for GC10M125891 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC10M125891 Gene

No Aliases found

ORGUL Members for GC10M125891 Gene

No data available for External Ids for GC10M125891 Gene

Summaries for GC10M125891 Gene

GeneCards Summary for GC10M125891 Gene

GC10M125891 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC10M125891 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC10M125891 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10M125891 Gene

Genomics for GC10M125891 Gene

GeneHancer (GH) Regulatory Elements for GC10M125891 Gene

Promoters and enhancers for GC10M125891 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J125887 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 650.7 +2.0 1987 2.3 SIX4 ATF1 FOXA2 NFRKB COPS2 GTF3C2 ZNF335 FOXK2 ZNF350 ZNF600 GC10M125891 RNU2-42P EDRF1 EDRF1-AS1 CTBP2 MMP21 UROS GC10P125882 GC10P125883 DHX32
GH10J125892 Enhancer 0.9 ENCODE dbSUPER 650.7 -2.0 -1987 1 ZSCAN26 DDX20 NFRKB BRCA1 ZNF507 GTF3C2 FOXM1 FOXK2 TCF7L2 ZNF174 GC10M125891 RNU2-42P EDRF1 EDRF1-AS1 BCCIP ENSG00000234134 DHX32 FANK1
GH10J125894 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.5 -5539 2.8 ARID4B SIN3A DMAP1 YY1 ZNF263 SP3 SP5 MXD4 REST ZNF662 DHX32 FANK1 EDRF1 EDRF1-AS1 CTBP2 BCCIP MMP21 GC10M125891 RNU2-42P
GH10J125885 Enhancer 0.9 ENCODE dbSUPER 0.7 +4.0 3972 1.6 ZNF174 TAF9B ARNT SUZ12 TEAD2 GLI4 BRF2 BRCA1 ZNF507 ZNF7 EDRF1 GC10M125891 GC10P125882 GC10P125883 RNU2-42P DHX32
GH10J125895 Enhancer 0.7 ENCODE dbSUPER 0.7 -3.9 -3869 0.2 ZNF687 FOXK2 SUZ12 CUX1 FOXA1 DHX32 FANK1 GC10M125891 RNU2-42P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC10M125891 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC10M125891 Gene

Genomic Locations for GC10M125891 Gene
chr10:125,890,523-125,890,678
(GRCh38/hg38)
Size:
156 bases
Orientation:
Minus strand

Genomic View for GC10M125891 Gene

Genes around GC10M125891 on UCSC Golden Path with GeneCards custom track

GC10M125891 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10M125891 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10M125891 Gene

Proteins for GC10M125891 Gene

Post-translational modifications for GC10M125891 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10M125891 Gene

Domains & Families for GC10M125891 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10M125891 Gene

Function for GC10M125891 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10M125891 Gene

Localization for GC10M125891 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC10M125891 Gene

Pathways & Interactions for GC10M125891 Gene

SuperPathways for GC10M125891 Gene

No Data Available

Interacting Proteins for GC10M125891 Gene

Gene Ontology (GO) - Biological Process for GC10M125891 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10M125891 Gene

Drugs & Compounds for GC10M125891 Gene

No Compound Related Data Available

Transcripts for GC10M125891 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC10M125891 Gene

No ASD Table

Relevant External Links for GC10M125891 Gene

GeneLoc Exon Structure for
GC10M125891

No data available for mRNA/cDNA for GC10M125891 Gene

Expression for GC10M125891 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10M125891 Gene

Orthologs for GC10M125891 Gene

No data available for Orthologs and Evolution for GC10M125891 Gene

Paralogs for GC10M125891 Gene

No data available for Paralogs for GC10M125891 Gene

Variants for GC10M125891 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC10M125891 Gene

Disorders for GC10M125891 Gene

No disorders were found for GC10M125891 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10M125891 Gene

Publications for GC10M125891 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC10M125891 Gene

Sources for GC10M125891 Gene

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