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Aliases for GC10M101365 Gene

Subcategory (RNA class) for GC10M101365 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC10M101365 Gene

No Aliases found

ORGUL Members for GC10M101365 Gene

No data available for External Ids for GC10M101365 Gene

Summaries for GC10M101365 Gene

GeneCards Summary for GC10M101365 Gene

GC10M101365 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC10M101365 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC10M101365 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10M101365 Gene

Genomics for GC10M101365 Gene

GeneHancer (GH) Regulatory Elements for GC10M101365 Gene

Promoters and enhancers for GC10M101365 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I101364 Enhancer 1.3 FANTOM5 ENCODE 550.8 +0.3 342 0.9 MLX ARNT ZFP64 ARID4B DMAP1 ZNF48 ETS1 SLC30A9 POLR2B CBX5 GC10M101365 RNU2-59P PPRC1 HPS6 LDB1 GBF1 MRPL43 BTRC FBXW4
GH10I101353 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 +10.6 10622 2.3 HDGF PKNOX1 ARID4B SIN3A IRF4 YY1 ZNF766 ZNF213 ZNF207 ZNF143 BTRC ENSG00000272572 GC10M101365 RNU2-59P
GH10I101367 Enhancer 0.9 ENCODE 0.8 -2.9 -2875 1.5 PKNOX1 INSM2 KLF17 TCF12 ZNF213 EGR1 ZNF366 ZSCAN5C SCRT2 ZNF391 LZTS2 RNU2-43P NOLC1 SLF2 SEC31B POLL GC10M101365 RNU2-59P BTRC GC10P101379
GH10I101358 Enhancer 0.7 ENCODE 0.4 +6.0 5969 1.1 ZBTB21 MZF1 ZEB1 ZNF664 ZNF366 ZSCAN5C PRDM10 FOS KLF8 ZNF362 BTRC GC10M101365 RNU2-59P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC10M101365 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC10M101365 Gene

Genomic Locations for GC10M101365 Gene
chr10:101,364,844-101,365,035
(GRCh38/hg38)
Size:
192 bases
Orientation:
Minus strand

Genomic View for GC10M101365 Gene

Genes around GC10M101365 on UCSC Golden Path with GeneCards custom track

GC10M101365 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10M101365 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10M101365 Gene

Proteins for GC10M101365 Gene

Post-translational modifications for GC10M101365 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10M101365 Gene

Domains & Families for GC10M101365 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10M101365 Gene

Function for GC10M101365 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10M101365 Gene

Localization for GC10M101365 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC10M101365 Gene

Pathways & Interactions for GC10M101365 Gene

SuperPathways for GC10M101365 Gene

No Data Available

Interacting Proteins for GC10M101365 Gene

Gene Ontology (GO) - Biological Process for GC10M101365 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10M101365 Gene

Drugs & Compounds for GC10M101365 Gene

No Compound Related Data Available

Transcripts for GC10M101365 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10M101365 Gene

No ASD Table

Relevant External Links for GC10M101365 Gene

GeneLoc Exon Structure for
GC10M101365

No data available for mRNA/cDNA for GC10M101365 Gene

Expression for GC10M101365 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10M101365 Gene

Orthologs for GC10M101365 Gene

No data available for Orthologs and Evolution for GC10M101365 Gene

Paralogs for GC10M101365 Gene

No data available for Paralogs for GC10M101365 Gene

Variants for GC10M101365 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC10M101365 Gene

Disorders for GC10M101365 Gene

No disorders were found for GC10M101365 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10M101365 Gene

Publications for GC10M101365 Gene

  1. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  2. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC10M101365 Gene

Sources for GC10M101365 Gene

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