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Aliases for GC10M093511 Gene

Subcategory (RNA class) for GC10M093511 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC10M093511 Gene

No Aliases found

ORGUL Members for GC10M093511 Gene

No data available for External Ids for GC10M093511 Gene

Summaries for GC10M093511 Gene

GeneCards Summary for GC10M093511 Gene

GC10M093511 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC10M093511 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC10M093511 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10M093511 Gene

Genomics for GC10M093511 Gene

GeneHancer (GH) Regulatory Elements for GC10M093511 Gene

Promoters and enhancers for GC10M093511 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I093511 Enhancer 0.5 ENCODE 550.8 -0.8 -809 0.1 CTCF ZNF654 TRIM22 ZC3H11A SMC3 CUX1 RAD21 GC10M093511 RNA5SP323 PDE6C NOC3L RPL17P34 CEP55 GC10M093549
GH10I093498 Enhancer 0.8 ENCODE dbSUPER 0.4 +12.2 12216 0.9 ZNF202 TCF12 ZNF658 HDAC2 NCOR1 ZNF366 TEAD4 CBFA2T3 CBFA2T2 CEP55 RPL17P34 PDE6C NOC3L RNA5SP323 GC10M093511
GH10I093541 Enhancer 1 Ensembl ENCODE 0.3 -31.9 -31896 1.2 PKNOX1 NFIB KLF17 MZF1 ZNF195 ZNF2 RAD21 ZNF335 ZNF121 GLIS2 FRA10AC1 RPL17P34 HELLS RBP4 GC10M093549 GC10M093511 RNA5SP323
GH10I093548 Enhancer 0.9 Ensembl ENCODE 0.3 -38.1 -38089 0.9 SMARCE1 FOXA2 JUN REST DPF2 FOXA1 SREBF1 SP1 JUND GATA3 GC10M093549 RNA5SP323 GC10M093511
GH10I093514 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 -5.0 -5021 2.2 CEP55 FFAR4 CYP26A1 GC10M093511 RNA5SP323 GC10M093549
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC10M093511 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC10M093511 Gene

Genomic Locations for GC10M093511 Gene
chr10:93,510,567-93,510,680
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand

Genomic View for GC10M093511 Gene

Genes around GC10M093511 on UCSC Golden Path with GeneCards custom track

GC10M093511 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10M093511 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10M093511 Gene

Proteins for GC10M093511 Gene

Post-translational modifications for GC10M093511 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10M093511 Gene

Domains & Families for GC10M093511 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10M093511 Gene

Function for GC10M093511 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10M093511 Gene

Localization for GC10M093511 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC10M093511 Gene

Pathways & Interactions for GC10M093511 Gene

SuperPathways for GC10M093511 Gene

No Data Available

Interacting Proteins for GC10M093511 Gene

Gene Ontology (GO) - Biological Process for GC10M093511 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10M093511 Gene

Drugs & Compounds for GC10M093511 Gene

No Compound Related Data Available

Transcripts for GC10M093511 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10M093511 Gene

No ASD Table

Relevant External Links for GC10M093511 Gene

GeneLoc Exon Structure for
GC10M093511

No data available for mRNA/cDNA for GC10M093511 Gene

Expression for GC10M093511 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10M093511 Gene

Orthologs for GC10M093511 Gene

No data available for Orthologs and Evolution for GC10M093511 Gene

Paralogs for GC10M093511 Gene

No data available for Paralogs for GC10M093511 Gene

Variants for GC10M093511 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC10M093511 Gene

Disorders for GC10M093511 Gene

No disorders were found for GC10M093511 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10M093511 Gene

Publications for GC10M093511 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC10M093511 Gene

Sources for GC10M093511 Gene

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