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Aliases for GC0YP010221 Gene

Subcategory (RNA class) for GC0YP010221 Gene

rRNA

Quality Score for this RNA gene is

15

Aliases for GC0YP010221 Gene

No Aliases found

ORGUL Members for GC0YP010221 Gene

No data available for External Ids for GC0YP010221 Gene

Summaries for GC0YP010221 Gene

GeneCards Summary for GC0YP010221 Gene

GC0YP010221 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC0YP010221 Gene

  • rRNA_5_8S: 5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea.

Additional gene information for GC0YP010221 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0YP010221 Gene

Genomics for GC0YP010221 Gene

GeneHancer (GH) Regulatory Elements for GC0YP010221 Gene

Promoters and enhancers for GC0YP010221 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0YJ010200 Enhancer 0.6 ENCODE 650.7 +0.1 55 0.3 AHR ZBTB25 ELF1 KDM3A ETV5 ZNF205 SP1 ATF3 IKZF5 ZBTB33 ENSG00000225840 GC0YM010200 GC0YP010215 GC0YP010217 GC0YP010219 GC0YP010221 RNA5-8SP6 PIR34208 PIR43677
GH0YJ010197 Enhancer 0.2 ENCODE 650.7 -1.7 -1734 1.3 ENSG00000225840 GC0YM010200 GC0YP010199 GC0YP010215 GC0YP010217 GC0YP010219 GC0YP010221 LOC101059962 RNA18SP2 RNA5-8SP6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC0YP010221 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC0YP010221 Gene

Genomic Locations for GC0YP010221 Gene
chrY:10,200,154-10,200,306
(GRCh38/hg38)
Size:
153 bases
Orientation:
Plus strand

Genomic View for GC0YP010221 Gene

Genes around GC0YP010221 on UCSC Golden Path with GeneCards custom track

GC0YP010221 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0YP010221 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0YP010221 Gene

Proteins for GC0YP010221 Gene

Post-translational modifications for GC0YP010221 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0YP010221 Gene

Domains & Families for GC0YP010221 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0YP010221 Gene

Function for GC0YP010221 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0YP010221 Gene

Localization for GC0YP010221 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0YP010221 Gene

Pathways & Interactions for GC0YP010221 Gene

SuperPathways for GC0YP010221 Gene

No Data Available

Interacting Proteins for GC0YP010221 Gene

Gene Ontology (GO) - Biological Process for GC0YP010221 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0YP010221 Gene

Drugs & Compounds for GC0YP010221 Gene

No Compound Related Data Available

Transcripts for GC0YP010221 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0YP010221 Gene

No ASD Table

Relevant External Links for GC0YP010221 Gene

GeneLoc Exon Structure for
GC0YP010221

No data available for mRNA/cDNA for GC0YP010221 Gene

Expression for GC0YP010221 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0YP010221 Gene

Orthologs for GC0YP010221 Gene

No data available for Orthologs and Evolution for GC0YP010221 Gene

Paralogs for GC0YP010221 Gene

No data available for Paralogs for GC0YP010221 Gene

Variants for GC0YP010221 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC0YP010221 Gene

Disorders for GC0YP010221 Gene

No disorders were found for GC0YP010221 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0YP010221 Gene

Publications for GC0YP010221 Gene

  1. The European Large Subunit Ribosomal RNA Database. (PMID: 11125083) Wuyts J … De Wachter R (Nucleic acids research 2001) 1
  2. Role of the 5.8S rRNA in ribosome translocation. (PMID: 9108162) Abou Elela S … Nazar RN (Nucleic acids research 1997) 1
  3. Cytoplasmic p53 polypeptide is associated with ribosomes. (PMID: 9154813) Fontoura BM … Carroll RB (Molecular and cellular biology 1997) 1

Products for GC0YP010221 Gene

Sources for GC0YP010221 Gene

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