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Aliases for GC0XM131939 Gene

Subcategory (RNA class) for GC0XM131939 Gene


Quality Score for this RNA gene is


Aliases for GC0XM131939 Gene

No Aliases found

ORGUL Members for GC0XM131939 Gene

No data available for External Ids for GC0XM131939 Gene

Summaries for GC0XM131939 Gene

GeneCards Summary for GC0XM131939 Gene

GC0XM131939 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC0XM131939 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC0XM131939 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM131939 Gene

Genomics for GC0XM131939 Gene

GeneHancer (GH) Regulatory Elements for GC0XM131939 Gene

Promoters and enhancers for GC0XM131939 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI131985 Enhancer 1.1 Ensembl ENCODE 0.2 -48.2 -48151 3.9 PKNOX1 FOXA2 IRF4 TCF12 ATF7 RUNX3 JUNB ZNF592 CBX8 SMARCA4 GC0XP132015 RNA5SP514 GC0XM131939
GH0XI132004 Enhancer 0.5 ENCODE 0.2 -66.0 -66012 1 FOSL1 HMBOX1 CBFA2T3 DPF2 ATF7 ZNF644 GC0XP132015 GC0XM131939 RNA5SP514
GH0XI132001 Enhancer 0.4 ENCODE 0.2 -62.3 -62292 0.1 PKNOX1 CREB1 FOS GC0XP132015 RNA5SP514 GC0XM131939
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC0XM131939 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC0XM131939 Gene

Genomic Locations for GC0XM131939 Gene
112 bases
Minus strand

Genomic View for GC0XM131939 Gene

Genes around GC0XM131939 on UCSC Golden Path with GeneCards custom track

GC0XM131939 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM131939 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM131939 Gene

Proteins for GC0XM131939 Gene

Post-translational modifications for GC0XM131939 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM131939 Gene

Domains & Families for GC0XM131939 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM131939 Gene

Function for GC0XM131939 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM131939 Gene

Localization for GC0XM131939 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XM131939 Gene

Pathways & Interactions for GC0XM131939 Gene

SuperPathways for GC0XM131939 Gene

No Data Available

Interacting Proteins for GC0XM131939 Gene

Gene Ontology (GO) - Biological Process for GC0XM131939 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC0XM131939 Gene

Drugs & Compounds for GC0XM131939 Gene

No Compound Related Data Available

Transcripts for GC0XM131939 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM131939 Gene

No ASD Table

Relevant External Links for GC0XM131939 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC0XM131939 Gene

Expression for GC0XM131939 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM131939 Gene

Orthologs for GC0XM131939 Gene

No data available for Orthologs and Evolution for GC0XM131939 Gene

Paralogs for GC0XM131939 Gene

No data available for Paralogs for GC0XM131939 Gene

Variants for GC0XM131939 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC0XM131939 Gene

Disorders for GC0XM131939 Gene

No disorders were found for GC0XM131939 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM131939 Gene

Publications for GC0XM131939 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC0XM131939 Gene

Sources for GC0XM131939 Gene

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