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Aliases for GC0XM116401 Gene

Subcategory (RNA class) for GC0XM116401 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC0XM116401 Gene

No Aliases found

ORGUL Members for GC0XM116401 Gene

No data available for External Ids for GC0XM116401 Gene

Summaries for GC0XM116401 Gene

GeneCards Summary for GC0XM116401 Gene

GC0XM116401 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0XM116401 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC0XM116401 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM116401 Gene

Genomics for GC0XM116401 Gene

GeneHancer (GH) Regulatory Elements for GC0XM116401 Gene

Promoters and enhancers for GC0XM116401 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI116317 Enhancer 0.5 ENCODE 0.2 +82.5 82541 2.2 PKNOX1 NFIB USF2 FOSL2 FOS GC0XM116401 RNU6-154P GC0XP116203
GH0XI116271 Enhancer 0.9 Ensembl ENCODE 0.1 +128.4 128379 2.6 JUN RAD21 BRCA1 ZNF143 SMC3 RCOR1 FOSL2 FOS CHD2 TCF7L2 SLC6A14 GC0XP116203 RNU6-154P GC0XM116401
GH0XI116229 Enhancer 0.7 ENCODE 0.1 +169.9 169858 3.6 FOXA2 CEBPB REST CEBPG EP300 FOXA1 SP1 CTBP1 JUND GATA3 AGTR2 SLC6A14 GC0XP116203 RNU6-154P GC0XM116401
GH0XI116237 Enhancer 0.7 Ensembl ENCODE 0.1 +161.5 161494 3.2 GATA3 NFIB DPF2 FOXA1 SLC6A14 GC0XP116203 RNU6-154P GC0XM116401
GH0XI116284 Enhancer 0.6 ENCODE 0.1 +116.4 116354 0.2 PKNOX1 NFIB CEBPB DPF2 MNT EP300 ZBTB40 RFX5 FOXA1 CTBP1 GC0XP116203 GC0XM116401 RNU6-154P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC0XM116401 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC0XM116401 Gene

Genomic Locations for GC0XM116401 Gene
chrX:116,400,847-116,400,953
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for GC0XM116401 Gene

Genes around GC0XM116401 on UCSC Golden Path with GeneCards custom track

GC0XM116401 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM116401 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM116401 Gene

Proteins for GC0XM116401 Gene

Post-translational modifications for GC0XM116401 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM116401 Gene

Domains & Families for GC0XM116401 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM116401 Gene

Function for GC0XM116401 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM116401 Gene

Localization for GC0XM116401 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XM116401 Gene

Pathways & Interactions for GC0XM116401 Gene

SuperPathways for GC0XM116401 Gene

No Data Available

Interacting Proteins for GC0XM116401 Gene

Gene Ontology (GO) - Biological Process for GC0XM116401 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XM116401 Gene

Drugs & Compounds for GC0XM116401 Gene

No Compound Related Data Available

Transcripts for GC0XM116401 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM116401 Gene

No ASD Table

Relevant External Links for GC0XM116401 Gene

GeneLoc Exon Structure for
GC0XM116401

No data available for mRNA/cDNA for GC0XM116401 Gene

Expression for GC0XM116401 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM116401 Gene

Orthologs for GC0XM116401 Gene

No data available for Orthologs and Evolution for GC0XM116401 Gene

Paralogs for GC0XM116401 Gene

No data available for Paralogs for GC0XM116401 Gene

Variants for GC0XM116401 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC0XM116401 Gene

Disorders for GC0XM116401 Gene

No disorders were found for GC0XM116401 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM116401 Gene

Publications for GC0XM116401 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC0XM116401 Gene

Sources for GC0XM116401 Gene

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