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Aliases for GC0XM072378 Gene

Subcategory (RNA class) for GC0XM072378 Gene


Quality Score for this RNA gene is


Aliases for GC0XM072378 Gene

No Aliases found

ORGUL Members for GC0XM072378 Gene

No data available for External Ids for GC0XM072378 Gene

Summaries for GC0XM072378 Gene

GeneCards Summary for GC0XM072378 Gene

GC0XM072378 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0XM072378 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC0XM072378 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM072378 Gene

Genomics for GC0XM072378 Gene

GeneHancer (GH) Regulatory Elements for GC0XM072378 Gene

Promoters and enhancers for GC0XM072378 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI072381 Enhancer 0.6 ENCODE 0.8 -4.8 -4817 0.2 SMARCE1 HDAC1 SOX5 MEIS2 PKNOX1 FOXA2 FEZF1 EP300 GATA3 IKZF1 CITED1 GC0XM072378 RNU2-68P HDAC8
GH0XI072393 Enhancer 0.7 Ensembl ENCODE 0.4 -17.6 -17620 3.4 ZNF449 PRDM10 PRDM4 TRIM28 CITED1 GC0XM072378 RNU2-68P HDAC8
GH0XI072308 Enhancer 1 Ensembl ENCODE 0.2 +68.1 68079 1 ATF1 SIN3A ZNF335 KLF13 CEBPB ZNF148 ZNF217 SP1 ZFP69B ZNF610 CITED1 RTL5 PIN4 LOC105373250 GC0XM072378 RNU2-68P
GH0XI072571 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.1 -195.6 -195582 1.9 PKNOX1 CLOCK ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 E2F8 ZNF207 HDAC8 TOMM20P4 FAM226B GC0XM072378 RNU2-68P
GH0XI072416 Enhancer 0.4 FANTOM5 0.3 -39.0 -38957 0.1 ZNF384 HDAC8 RNU2-68P GC0XM072378
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC0XM072378 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC0XM072378 Gene

Genomic Locations for GC0XM072378 Gene
192 bases
Minus strand

Genomic View for GC0XM072378 Gene

Genes around GC0XM072378 on UCSC Golden Path with GeneCards custom track

GC0XM072378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM072378 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM072378 Gene

Proteins for GC0XM072378 Gene

Post-translational modifications for GC0XM072378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM072378 Gene

Domains & Families for GC0XM072378 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM072378 Gene

Function for GC0XM072378 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM072378 Gene

Localization for GC0XM072378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XM072378 Gene

Pathways & Interactions for GC0XM072378 Gene

SuperPathways for GC0XM072378 Gene

No Data Available

Interacting Proteins for GC0XM072378 Gene

Gene Ontology (GO) - Biological Process for GC0XM072378 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC0XM072378 Gene

Drugs & Compounds for GC0XM072378 Gene

No Compound Related Data Available

Transcripts for GC0XM072378 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM072378 Gene

No ASD Table

Relevant External Links for GC0XM072378 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC0XM072378 Gene

Expression for GC0XM072378 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM072378 Gene

Orthologs for GC0XM072378 Gene

No data available for Orthologs and Evolution for GC0XM072378 Gene

Paralogs for GC0XM072378 Gene

No data available for Paralogs for GC0XM072378 Gene

Variants for GC0XM072378 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC0XM072378 Gene

Disorders for GC0XM072378 Gene

No disorders were found for GC0XM072378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM072378 Gene

Publications for GC0XM072378 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC0XM072378 Gene

Sources for GC0XM072378 Gene

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