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Aliases for GC0XM071966 Gene

Subcategory (RNA class) for GC0XM071966 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC0XM071966 Gene

No Aliases found

ORGUL Members for GC0XM071966 Gene

No data available for External Ids for GC0XM071966 Gene

Summaries for GC0XM071966 Gene

GeneCards Summary for GC0XM071966 Gene

GC0XM071966 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0XM071966 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC0XM071966 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM071966 Gene

Genomics for GC0XM071966 Gene

GeneHancer (GH) Regulatory Elements for GC0XM071966 Gene

Promoters and enhancers for GC0XM071966 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI071956 Enhancer 0.6 ENCODE 0.4 +8.0 7979 2.6 CTCF PKNOX1 CEBPB CEBPG REST NR2F2 ZNF148 SP1 GLIS1 PRDM10 NHSL2 GC0XM071966 RNU6-1078P PIR46915
GH0XI072003 Enhancer 0.8 Ensembl ENCODE 0.3 -38.2 -38178 1.7 BCOR CTCF BACH1 ZMYM3 ZIC2 RAD21 ZFHX2 ZFP36 EGR2 GC0XM071966 RNU6-1078P RPS26P11 NHSL2
GH0XI072018 Enhancer 1.1 Ensembl ENCODE 0.2 -53.6 -53557 2.9 ATF1 ARNT ZNF48 GLIS2 ZNF143 FOS ATF7 RUNX3 MXD4 REST NHSL2 RTL5 RPS26P11 GC0XM071966 RNU6-1078P
GH0XI072028 Enhancer 1.1 Ensembl ENCODE 0.2 -63.8 -63791 2.7 PKNOX1 FOXA2 INSM2 RFX5 YY1 RCOR1 FOS DEK EGR2 CEBPB RTL5 NHSL2 PIN4 RPS26P11 GC0XM071966 RNU6-1078P
GH0XI071996 Enhancer 0.7 ENCODE 0.3 -31.0 -30984 1.4 MEIS2 KLF1 PKNOX1 TEAD4 TAL1 SIN3A TCF12 CTBP1 GATA3 TCF7L2 NHSL2 RTL5 GC0XM071966 RNU6-1078P RPS26P11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC0XM071966 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC0XM071966 Gene

Genomic Locations for GC0XM071966 Gene
chrX:71,965,971-71,966,074
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for GC0XM071966 Gene

Genes around GC0XM071966 on UCSC Golden Path with GeneCards custom track

GC0XM071966 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM071966 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM071966 Gene

Proteins for GC0XM071966 Gene

Post-translational modifications for GC0XM071966 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM071966 Gene

Domains & Families for GC0XM071966 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM071966 Gene

Function for GC0XM071966 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM071966 Gene

Localization for GC0XM071966 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XM071966 Gene

Pathways & Interactions for GC0XM071966 Gene

SuperPathways for GC0XM071966 Gene

No Data Available

Interacting Proteins for GC0XM071966 Gene

Gene Ontology (GO) - Biological Process for GC0XM071966 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XM071966 Gene

Drugs & Compounds for GC0XM071966 Gene

No Compound Related Data Available

Transcripts for GC0XM071966 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM071966 Gene

No ASD Table

Relevant External Links for GC0XM071966 Gene

GeneLoc Exon Structure for
GC0XM071966

No data available for mRNA/cDNA for GC0XM071966 Gene

Expression for GC0XM071966 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM071966 Gene

Orthologs for GC0XM071966 Gene

No data available for Orthologs and Evolution for GC0XM071966 Gene

Paralogs for GC0XM071966 Gene

No data available for Paralogs for GC0XM071966 Gene

Variants for GC0XM071966 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC0XM071966 Gene

Disorders for GC0XM071966 Gene

No disorders were found for GC0XM071966 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM071966 Gene

Publications for GC0XM071966 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC0XM071966 Gene

Sources for GC0XM071966 Gene

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