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Aliases for GC0XM045893 Gene

Subcategory (RNA class) for GC0XM045893 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC0XM045893 Gene

No Aliases found

ORGUL Members for GC0XM045893 Gene

No data available for External Ids for GC0XM045893 Gene

Summaries for GC0XM045893 Gene

GeneCards Summary for GC0XM045893 Gene

GC0XM045893 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC0XM045893 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC0XM045893 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM045893 Gene

Genomics for GC0XM045893 Gene

GeneHancer (GH) Regulatory Elements for GC0XM045893 Gene

Promoters and enhancers for GC0XM045893 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI045907 Enhancer 0.4 ENCODE 0.4 -15.0 -14992 0.2 TAL1 CBFA2T3 LOC100128442 GC0XM045893 ENSG00000212347
GH0XI045903 Enhancer 0.3 ENCODE 0.4 -11.2 -11208 1.7 USF1 LOC100128442 GC0XM045893 ENSG00000212347
GH0XI045908 Enhancer 0.3 ENCODE 0.4 -16.2 -16156 1.3 ZNF512 LOC100128442 GC0XM045893 ENSG00000212347
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC0XM045893 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC0XM045893 Gene

Genomic Locations for GC0XM045893 Gene
chrX:45,892,911-45,892,979
(GRCh38/hg38)
Size:
69 bases
Orientation:
Minus strand

Genomic View for GC0XM045893 Gene

Genes around GC0XM045893 on UCSC Golden Path with GeneCards custom track

GC0XM045893 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM045893 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM045893 Gene

Proteins for GC0XM045893 Gene

Post-translational modifications for GC0XM045893 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM045893 Gene

Domains & Families for GC0XM045893 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM045893 Gene

Function for GC0XM045893 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM045893 Gene

Localization for GC0XM045893 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XM045893 Gene

Pathways & Interactions for GC0XM045893 Gene

SuperPathways for GC0XM045893 Gene

No Data Available

Interacting Proteins for GC0XM045893 Gene

Gene Ontology (GO) - Biological Process for GC0XM045893 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XM045893 Gene

Drugs & Compounds for GC0XM045893 Gene

No Compound Related Data Available

Transcripts for GC0XM045893 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM045893 Gene

No ASD Table

Relevant External Links for GC0XM045893 Gene

GeneLoc Exon Structure for
GC0XM045893

No data available for mRNA/cDNA for GC0XM045893 Gene

Expression for GC0XM045893 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM045893 Gene

Orthologs for GC0XM045893 Gene

No data available for Orthologs and Evolution for GC0XM045893 Gene

Paralogs for GC0XM045893 Gene

No data available for Paralogs for GC0XM045893 Gene

Variants for GC0XM045893 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC0XM045893 Gene

Disorders for GC0XM045893 Gene

No disorders were found for GC0XM045893 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM045893 Gene

Publications for GC0XM045893 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski KT … Steitz JA (Current biology : CB 2004) 1

Products for GC0XM045893 Gene

Sources for GC0XM045893 Gene

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