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Aliases for GC09P136671 Gene

Subcategory (RNA class) for GC09P136671 Gene

miRNA

Quality Score for this RNA gene is

0.4

Aliases for GC09P136671 Gene

No Aliases found

ORGUL Members for GC09P136671 Gene

No data available for External Ids for GC09P136671 Gene

Summaries for GC09P136671 Gene

GeneCards Summary for GC09P136671 Gene

GC09P136671 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC09P136671 Gene - the ORGUL cluster for this gene includes several descriptions:

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P136671

Additional gene information for GC09P136671 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P136671 Gene

Genomics for GC09P136671 Gene

GeneHancer (GH) Regulatory Elements for GC09P136671 Gene

Promoters and enhancers for GC09P136671 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I136671 Enhancer 1 ENCODE dbSUPER 550.8 +1.4 1420 1.3 HNRNPUL1 RB1 ZNF2 RAD21 POLR2B GLIS2 EGR1 ZNF143 EGR2 SMAD5 GC09P136671 MIR126 SNHG7 SEC16A DPH7 EHMT1 ANAPC2 FAM69B AGPAT2 EXD3
GH09I136653 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -8.2 -8180 17.1 HDGF HNRNPUL1 SMAD1 ATF1 ARNT TCF12 POLR2B ZNF766 GLIS2 GATA2 EGFL7 GC09M136660 HSPC324 AGPAT2 SNHG7 DPH7 EHMT1 ANAPC2 EXD3 MAN1B1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P136671 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P136671 Gene

Genomic Locations for GC09P136671 Gene
chr9:136,670,601-136,670,686
(GRCh38/hg38)
Size:
86 bases
Orientation:
Plus strand

Genomic View for GC09P136671 Gene

Genes around GC09P136671 on UCSC Golden Path with GeneCards custom track

GC09P136671 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P136671 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P136671 Gene

ORGUL Member Location for GC09P136671 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P136671 Gene

Proteins for GC09P136671 Gene

Post-translational modifications for GC09P136671 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P136671 Gene

Domains & Families for GC09P136671 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P136671 Gene

Function for GC09P136671 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P136671 Gene

Localization for GC09P136671 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P136671 Gene

Pathways & Interactions for GC09P136671 Gene

SuperPathways for GC09P136671 Gene

No Data Available

Interacting Proteins for GC09P136671 Gene

Gene Ontology (GO) - Biological Process for GC09P136671 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P136671 Gene

Drugs & Compounds for GC09P136671 Gene

No Compound Related Data Available

Transcripts for GC09P136671 Gene

fRNAdb Secondary structures for GC09P136671 Gene

  • FR332998
  • FR311460
  • FR016063

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P136671 Gene

No ASD Table

Relevant External Links for GC09P136671 Gene

GeneLoc Exon Structure for
GC09P136671

No data available for mRNA/cDNA for GC09P136671 Gene

Expression for GC09P136671 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P136671 Gene

Orthologs for GC09P136671 Gene

No data available for Orthologs and Evolution for GC09P136671 Gene

Paralogs for GC09P136671 Gene

No data available for Paralogs for GC09P136671 Gene

Variants for GC09P136671 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P136671 Gene

Disorders for GC09P136671 Gene

No disorders were found for GC09P136671 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P136671 Gene

Publications for GC09P136671 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  4. Identification of tissue-specific microRNAs from mouse. (PMID: 12007417) Lagos-Quintana M … Tuschl T (Current biology : CB 2002) 1

Products for GC09P136671 Gene

Sources for GC09P136671 Gene

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