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Aliases for GC09P133386 Gene

Subcategory (RNA class) for GC09P133386 Gene

snoRNA

Quality Score for this RNA gene is

9

Aliases for GC09P133386 Gene

No Aliases found

No data available for External Ids for GC09P133386 Gene

Summaries for GC09P133386 Gene

GeneCards Summary for GC09P133386 Gene

GC09P133386 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC09P133386 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC09P133386

Additional gene information for GC09P133386 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P133386 Gene

Genomics for GC09P133386 Gene

GeneHancer (GH) Regulatory Elements for GC09P133386 Gene

Promoters and enhancers for GC09P133386 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I133346 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -1.6 -1638 4.5 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 MED22 RPL7A GC09P133386 GC09P133408 GC09P133432 GC09P133433 GC09P133435 GC09P133437 PIR63017 SNORD24
GH09I133352 Enhancer 0.9 ENCODE 550.8 +1.7 1703 0.6 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF48 ZNF280A GTF3C2 POLR2B CBX5 GC09P133386 GC09P133429 GC09P133433 GC09P133436 PIR63017 PIR45308 SNORD36A SNORD36C SETX GTF3C5
GH09I133351 Enhancer 0.6 ENCODE 550.8 +1.3 1306 0.2 CTCF KLF1 USF2 ZEB2 SMARCB1 SP1 JUND POLR2A SMARCA4 RBM39 GC09P133386 GC09P133408 GC09P133429 GC09P133433 GC09P133436 PIR63017 PIR45308 SNORD36A SNORD36B SNORD36C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P133386 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P133386 Gene

Genomic Locations for GC09P133386 Gene
chr9:133,350,455-133,350,528
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand

Genomic View for GC09P133386 Gene

Genes around GC09P133386 on UCSC Golden Path with GeneCards custom track

GC09P133386 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P133386 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P133386 Gene

ORGUL Member Location for GC09P133386 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P133386 Gene

Proteins for GC09P133386 Gene

Post-translational modifications for GC09P133386 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P133386 Gene

Domains & Families for GC09P133386 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P133386 Gene

Function for GC09P133386 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P133386 Gene

Localization for GC09P133386 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P133386 Gene

Pathways & Interactions for GC09P133386 Gene

SuperPathways for GC09P133386 Gene

No Data Available

Interacting Proteins for GC09P133386 Gene

Gene Ontology (GO) - Biological Process for GC09P133386 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P133386 Gene

Drugs & Compounds for GC09P133386 Gene

No Compound Related Data Available

Transcripts for GC09P133386 Gene

fRNAdb Secondary structures for GC09P133386 Gene

  • FR075247
  • FR383980

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P133386 Gene

No ASD Table

Relevant External Links for GC09P133386 Gene

GeneLoc Exon Structure for
GC09P133386

No data available for mRNA/cDNA for GC09P133386 Gene

Expression for GC09P133386 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P133386 Gene

Orthologs for GC09P133386 Gene

No data available for Orthologs and Evolution for GC09P133386 Gene

Paralogs for GC09P133386 Gene

No data available for Paralogs for GC09P133386 Gene

Variants for GC09P133386 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P133386 Gene

Disorders for GC09P133386 Gene

No disorders were found for GC09P133386 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P133386 Gene

Publications for GC09P133386 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for GC09P133386 Gene

Sources for GC09P133386 Gene

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