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Aliases for GC09P128094 Gene

Subcategory (RNA class) for GC09P128094 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC09P128094 Gene

No Aliases found

ORGUL Members for GC09P128094 Gene

No data available for External Ids for GC09P128094 Gene

Summaries for GC09P128094 Gene

GeneCards Summary for GC09P128094 Gene

GC09P128094 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P128094 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P128094

Additional gene information for GC09P128094 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P128094 Gene

Genomics for GC09P128094 Gene

GeneHancer (GH) Regulatory Elements for GC09P128094 Gene

Promoters and enhancers for GC09P128094 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I128090 Promoter/Enhancer 1.7 EPDnew ENCODE dbSUPER 550.8 -1.2 -1155 5.3 HDGF PKNOX1 ATF1 FOXA2 ARNT ARID4B SIN3A YY1 TCF12 POLR2B SLC25A25 ENSG00000230536 GC09P128094 SLC25A25-AS1 PTGES2 PTGES2-AS1 NAIF1 ENSG00000230848 LCN2 C9orf16
GH09I128097 Enhancer 0.4 ENCODE dbSUPER 550.8 +1.9 1851 0 ENSG00000230536 GC09P128094 SLC25A25-AS1 PTGES2 PTGES2-AS1 NAIF1 SLC25A25 LCN2 C9orf16 DNM1
GH09I128077 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -14.1 -14123 5.6 HDGF PKNOX1 ARNT ARID4B YY1 ZNF766 FOS JUNB REST SREBF1 ENSG00000230848 SLC25A25-AS1 ENSG00000227218 DPM2 LCN2 C9orf16 CIZ1 ENSG00000230536 GC09P128094 SLC25A25
GH09I128070 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.3 -21.6 -21561 4.9 ATF1 FOXA2 SMAD1 ARID4B YY1 ZNF766 ZNF213 ZNF143 ATF7 RUNX3 ENSG00000227218 DPM2 LCN2 C9orf16 CIZ1 ENSG00000230536 SLC25A25-AS1 SLC25A25 TOR2A SH2D3C
GH09I128083 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -10.2 -10199 0.8 CTCF PKNOX1 TRIM22 REST RAD21 RFX5 SMC3 ZNF143 HNF4A RCOR1 ENSG00000230848 SLC25A25-AS1 GC09P128094 SLC25A25 NAIF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P128094 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P128094 Gene

Genomic Locations for GC09P128094 Gene
chr9:128,094,392-128,094,630
(GRCh38/hg38)
Size:
239 bases
Orientation:
Plus strand

Genomic View for GC09P128094 Gene

Genes around GC09P128094 on UCSC Golden Path with GeneCards custom track

GC09P128094 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P128094 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P128094 Gene

ORGUL Member Location for GC09P128094 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P128094 Gene

Proteins for GC09P128094 Gene

Post-translational modifications for GC09P128094 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P128094 Gene

Domains & Families for GC09P128094 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P128094 Gene

Function for GC09P128094 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P128094 Gene

Localization for GC09P128094 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P128094 Gene

Pathways & Interactions for GC09P128094 Gene

SuperPathways for GC09P128094 Gene

No Data Available

Interacting Proteins for GC09P128094 Gene

Gene Ontology (GO) - Biological Process for GC09P128094 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P128094 Gene

Drugs & Compounds for GC09P128094 Gene

No Compound Related Data Available

Transcripts for GC09P128094 Gene

fRNAdb Secondary structures for GC09P128094 Gene

  • FR089526
  • FR289606

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P128094 Gene

No ASD Table

Relevant External Links for GC09P128094 Gene

GeneLoc Exon Structure for
GC09P128094

No data available for mRNA/cDNA for GC09P128094 Gene

Expression for GC09P128094 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P128094 Gene

Orthologs for GC09P128094 Gene

No data available for Orthologs and Evolution for GC09P128094 Gene

Paralogs for GC09P128094 Gene

No data available for Paralogs for GC09P128094 Gene

Variants for GC09P128094 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P128094 Gene

Disorders for GC09P128094 Gene

No disorders were found for GC09P128094 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P128094 Gene

Publications for GC09P128094 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC09P128094 Gene

Sources for GC09P128094 Gene

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