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Aliases for GC09P124694 Gene

Subcategory (RNA class) for GC09P124694 Gene

miRNA

Quality Score for this RNA gene is

1.2

Aliases for GC09P124694 Gene

No Aliases found

ORGUL Members for GC09P124694 Gene

No data available for External Ids for GC09P124694 Gene

Summaries for GC09P124694 Gene

GeneCards Summary for GC09P124694 Gene

GC09P124694 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC09P124694 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P124694

Additional gene information for GC09P124694 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P124694 Gene

Genomics for GC09P124694 Gene

GeneHancer (GH) Regulatory Elements for GC09P124694 Gene

Promoters and enhancers for GC09P124694 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I124694 Enhancer 1.1 Ensembl ENCODE 0.8 +3.3 3270 5.2 ELF3 FOXA2 MLX ARID4B THRB RARA TCF12 FOS CEBPB MXD4 ENSG00000231149 NR5A1 MIR181A2HG GC09P124694 NR6A1 ENSG00000236643
GH09I124711 Enhancer 1.1 Ensembl ENCODE 0.4 +18.4 18376 0.6 HDGF ARNT ARID4B BRCA1 YY1 ZNF213 ARID2 ZNF143 RUNX3 DEK ENSG00000236643 NR6A1 RPL35 WDR38 ARPC5L MIR181A2HG GC09P124694
GH09I124707 Enhancer 0.9 Ensembl ENCODE 0.4 +14.9 14921 2.1 TEAD4 TAL1 FOSL1 TCF12 GATA3 POLR2A NCOR1 CBFA2T2 FOSL2 FOS MIR181A2HG GAPVD1 GC09P124694 NR6A1 ENSG00000236643
GH09I124720 Enhancer 1.1 Ensembl ENCODE 0.3 +27.5 27514 2 FOXA2 MLX ARID4B FEZF1 ZNF766 RXRA SP5 PPARG GLIS1 NR2C1 MIR181B2 MIR181A2 ENSG00000236643 NR6A1 WDR38 ARPC5L RPL35 ENSG00000231149 NR5A1 GC09P124694
GH09I124733 Enhancer 1.1 Ensembl ENCODE 0.3 +40.8 40813 2.5 ELF3 FOXA2 MLX ARID4B BATF ZNF48 ZSCAN9 RARA FOS CREM MIR181A2HG ENSG00000236643 NR6A1 GC09P124694
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P124694 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P124694 Gene

Genomic Locations for GC09P124694 Gene
chr9:124,693,724-124,693,780
(GRCh38/hg38)
Size:
57 bases
Orientation:
Plus strand

Genomic View for GC09P124694 Gene

Genes around GC09P124694 on UCSC Golden Path with GeneCards custom track

GC09P124694 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P124694 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P124694 Gene

ORGUL Member Location for GC09P124694 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P124694 Gene

Proteins for GC09P124694 Gene

Post-translational modifications for GC09P124694 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P124694 Gene

Domains & Families for GC09P124694 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P124694 Gene

Function for GC09P124694 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P124694 Gene

Localization for GC09P124694 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P124694 Gene

Pathways & Interactions for GC09P124694 Gene

SuperPathways for GC09P124694 Gene

No Data Available

Interacting Proteins for GC09P124694 Gene

Gene Ontology (GO) - Biological Process for GC09P124694 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P124694 Gene

Drugs & Compounds for GC09P124694 Gene

No Compound Related Data Available

Transcripts for GC09P124694 Gene

fRNAdb Secondary structures for GC09P124694 Gene

  • FR402608
  • FR187057

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P124694 Gene

No ASD Table

Relevant External Links for GC09P124694 Gene

GeneLoc Exon Structure for
GC09P124694

No data available for mRNA/cDNA for GC09P124694 Gene

Expression for GC09P124694 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P124694 Gene

Orthologs for GC09P124694 Gene

No data available for Orthologs and Evolution for GC09P124694 Gene

Paralogs for GC09P124694 Gene

No data available for Paralogs for GC09P124694 Gene

Variants for GC09P124694 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P124694 Gene

Disorders for GC09P124694 Gene

No disorders were found for GC09P124694 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P124694 Gene

Publications for GC09P124694 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Vertebrate microRNA genes. (PMID: 12624257) Lim LP … Bartel DP (Science (New York, N.Y.) 2003) 1
  5. Evolutionary biology. Small but mighty timekeepers. (PMID: 11081491) Adoutte A (Nature 2000) 1

Products for GC09P124694 Gene

Sources for GC09P124694 Gene

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