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Aliases for GC09P112170 Gene

Subcategory (RNA class) for GC09P112170 Gene

Y RNA

Quality Score for this RNA gene is

2

Aliases for GC09P112170 Gene

No Aliases found

ORGUL Members for GC09P112170 Gene

No data available for External Ids for GC09P112170 Gene

Summaries for GC09P112170 Gene

GeneCards Summary for GC09P112170 Gene

GC09P112170 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for GC09P112170 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC09P112170 Gene

Genomics for GC09P112170 Gene

GeneHancer (GH) Regulatory Elements for GC09P112170 Gene

Promoters and enhancers for GC09P112170 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I112167 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 +0.9 855 5.2 HDAC1 HDGF NFRKB NFXL1 ZBTB40 RFX5 TCF12 GATA2 RCOR1 ATF7 ENSG00000200261 GC09P112170 SUSD1 GC09M112174
GH09I112165 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 -2.9 -2900 1.4 CTCF RFX1 MTA2 ZFP64 CEBPB REST CEBPG RAD21 ZNF664 ZNF366 SUSD1 ENSG00000259953 GC09P112170 RNU6-855P
GH09I112162 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -6.1 -6121 1.8 SP1 GATA3 HNF1A FOXA2 FOSL2 NR2F6 SUSD1 GC09P112170 RNU6-855P
GH09I112144 Enhancer 0.7 ENCODE dbSUPER 0.3 -23.3 -23260 3 ZNF121 SP1 FOXA2 CEBPA FOSL2 FOS RPL29P20 SUSD1 RNU6-855P GC09P112170
GH09I112140 Enhancer 0.7 ENCODE 0.3 -28.4 -28369 0.7 PAX8 IRF4 TCF12 CBFA2T2 ATF7 IKZF2 RUNX3 SRF NR2F1 TRIM22 SUSD1 RPL29P20 RNU6-855P GC09P112170
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P112170 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P112170 Gene

Genomic Locations for GC09P112170 Gene
chr9:112,169,285-112,169,395
(GRCh38/hg38)
Size:
111 bases
Orientation:
Plus strand

Genomic View for GC09P112170 Gene

Genes around GC09P112170 on UCSC Golden Path with GeneCards custom track

GC09P112170 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P112170 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P112170 Gene

Proteins for GC09P112170 Gene

Post-translational modifications for GC09P112170 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P112170 Gene

Domains & Families for GC09P112170 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P112170 Gene

Function for GC09P112170 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P112170 Gene

Localization for GC09P112170 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P112170 Gene

Pathways & Interactions for GC09P112170 Gene

SuperPathways for GC09P112170 Gene

No Data Available

Interacting Proteins for GC09P112170 Gene

Gene Ontology (GO) - Biological Process for GC09P112170 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P112170 Gene

Drugs & Compounds for GC09P112170 Gene

No Compound Related Data Available

Transcripts for GC09P112170 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P112170 Gene

No ASD Table

Relevant External Links for GC09P112170 Gene

GeneLoc Exon Structure for
GC09P112170

No data available for mRNA/cDNA for GC09P112170 Gene

Expression for GC09P112170 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P112170 Gene

Orthologs for GC09P112170 Gene

No data available for Orthologs and Evolution for GC09P112170 Gene

Paralogs for GC09P112170 Gene

No data available for Paralogs for GC09P112170 Gene

Variants for GC09P112170 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P112170 Gene

Disorders for GC09P112170 Gene

No disorders were found for GC09P112170 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P112170 Gene

Publications for GC09P112170 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for GC09P112170 Gene

Sources for GC09P112170 Gene

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