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Aliases for GC09P110904 Gene

Subcategory (RNA class) for GC09P110904 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC09P110904 Gene

No Aliases found

ORGUL Members for GC09P110904 Gene

No data available for External Ids for GC09P110904 Gene

Summaries for GC09P110904 Gene

GeneCards Summary for GC09P110904 Gene

GC09P110904 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09P110904 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC09P110904 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P110904 Gene

Genomics for GC09P110904 Gene

GeneHancer (GH) Regulatory Elements for GC09P110904 Gene

Promoters and enhancers for GC09P110904 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J110900 Enhancer 0.7 ENCODE dbSUPER 650.7 -1.6 -1576 2 JUNB ZNF143 ZBTB33 MLLT1 KLF5 GC09P110904 RNU6-432P GC09P110867 LPAR1
GH09J110891 Enhancer 0.8 ENCODE dbSUPER 0.4 -10.9 -10923 1.3 HDGF REST SP1 JUND ZNF366 SCRT2 IKZF1 ZBTB33 FOSL2 ETV6 LPAR1 PTGR1 C9orf152 GC09P110904 GC09P110867
GH09J110897 Enhancer 0.4 ENCODE dbSUPER 0.7 -4.2 -4174 2.8 LPAR1 C9orf152 GC09P110904 GC09P110867
GH09J110887 Enhancer 0.6 ENCODE dbSUPER 0.4 -16.2 -16180 0.2 JUNB FOS IKZF2 LPAR1 GC09P110867 GC09P110904
GH09J110879 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 -22.6 -22626 2.4 SCRT2 ZNF600 RNU6-432P LPAR1 GC09P110867 GC09P110904
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC09P110904 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P110904 Gene

Genomic Locations for GC09P110904 Gene
chr9:110,903,336-110,903,445
(GRCh38/hg38)
Size:
110 bases
Orientation:
Plus strand

Genomic View for GC09P110904 Gene

Genes around GC09P110904 on UCSC Golden Path with GeneCards custom track

GC09P110904 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P110904 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P110904 Gene

Proteins for GC09P110904 Gene

Post-translational modifications for GC09P110904 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P110904 Gene

Domains & Families for GC09P110904 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P110904 Gene

Function for GC09P110904 Gene

Phenotypes From GWAS Catalog for GC09P110904 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC09P110904 Gene

Localization for GC09P110904 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P110904 Gene

Pathways & Interactions for GC09P110904 Gene

SuperPathways for GC09P110904 Gene

No Data Available

Interacting Proteins for GC09P110904 Gene

Gene Ontology (GO) - Biological Process for GC09P110904 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P110904 Gene

Drugs & Compounds for GC09P110904 Gene

No Compound Related Data Available

Transcripts for GC09P110904 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P110904 Gene

No ASD Table

Relevant External Links for GC09P110904 Gene

GeneLoc Exon Structure for
GC09P110904

No data available for mRNA/cDNA for GC09P110904 Gene

Expression for GC09P110904 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P110904 Gene

Orthologs for GC09P110904 Gene

No data available for Orthologs and Evolution for GC09P110904 Gene

Paralogs for GC09P110904 Gene

No data available for Paralogs for GC09P110904 Gene

Variants for GC09P110904 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P110904 Gene

Disorders for GC09P110904 Gene

No disorders were found for GC09P110904 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P110904 Gene

Publications for GC09P110904 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC09P110904 Gene

Sources for GC09P110904 Gene

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