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Aliases for GC09P108154 Gene

Subcategory (RNA class) for GC09P108154 Gene


Quality Score for this RNA gene is


Aliases for GC09P108154 Gene

No Aliases found

ORGUL Members for GC09P108154 Gene

No data available for External Ids for GC09P108154 Gene

Summaries for GC09P108154 Gene

GeneCards Summary for GC09P108154 Gene

GC09P108154 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P108154 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P108154

Additional gene information for GC09P108154 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P108154 Gene

Genomics for GC09P108154 Gene

GeneHancer (GH) Regulatory Elements for GC09P108154 Gene

Promoters and enhancers for GC09P108154 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I108156 Enhancer 1.1 Ensembl ENCODE 550.8 +1.7 1678 1.1 PKNOX1 ARNT TCF12 ZNF766 ATF7 NCOA1 MEF2D SMARCA4 MYNN STAT3 GC09P108154 PIR42671 LOC105376214
GH09I108150 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.8 -4.0 -4020 1.9 PKNOX1 JUN TEAD4 TAL1 MAX CEBPG RAD21 FOSL1 TCF12 CTBP1 GC09P108154 CHCHD4P2 LOC105376214
GH09I108141 Enhancer 0.7 Ensembl ENCODE 0.4 -12.3 -12292 2 CTCF RXRA ZNF585B MAX RAD21 NR2F2 ELP1 GC09P108154 CHCHD4P2 LOC105376214
GH09I108131 Enhancer 0.7 ENCODE 0.3 -23.9 -23858 0.1 NCOA3 CLOCK NFIB NEUROD1 BMI1 CTBP1 GATA3 RCOR1 FOS TCF7L2 GC09P108154 CHCHD4P2 LOC105376214
GH09I108158 Enhancer 0.2 Ensembl 0.8 +3.7 3717 0.2 PIR42671 GC09P108154 LOC105376214
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P108154 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P108154 Gene

Genomic Locations for GC09P108154 Gene
277 bases
Plus strand

Genomic View for GC09P108154 Gene

Genes around GC09P108154 on UCSC Golden Path with GeneCards custom track

GC09P108154 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P108154 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P108154 Gene

ORGUL Member Location for GC09P108154 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P108154 Gene

Proteins for GC09P108154 Gene

Post-translational modifications for GC09P108154 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P108154 Gene

Domains & Families for GC09P108154 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P108154 Gene

Function for GC09P108154 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P108154 Gene

Localization for GC09P108154 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P108154 Gene

Pathways & Interactions for GC09P108154 Gene

SuperPathways for GC09P108154 Gene

No Data Available

Interacting Proteins for GC09P108154 Gene

Gene Ontology (GO) - Biological Process for GC09P108154 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC09P108154 Gene

Drugs & Compounds for GC09P108154 Gene

No Compound Related Data Available

Transcripts for GC09P108154 Gene

fRNAdb Secondary structures for GC09P108154 Gene

  • FR139168
  • FR065731

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P108154 Gene

No ASD Table

Relevant External Links for GC09P108154 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC09P108154 Gene

Expression for GC09P108154 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P108154 Gene

Orthologs for GC09P108154 Gene

No data available for Orthologs and Evolution for GC09P108154 Gene

Paralogs for GC09P108154 Gene

No data available for Paralogs for GC09P108154 Gene

Variants for GC09P108154 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P108154 Gene

Disorders for GC09P108154 Gene

No disorders were found for GC09P108154 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P108154 Gene

Publications for GC09P108154 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC09P108154 Gene

Sources for GC09P108154 Gene

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