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Aliases for GC09P087261 Gene

Subcategory (RNA class) for GC09P087261 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC09P087261 Gene

No Aliases found

ORGUL Members for GC09P087261 Gene

No data available for External Ids for GC09P087261 Gene

Summaries for GC09P087261 Gene

GeneCards Summary for GC09P087261 Gene

GC09P087261 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC09P087261 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC09P087261 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P087261 Gene

Genomics for GC09P087261 Gene

GeneHancer (GH) Regulatory Elements for GC09P087261 Gene

Promoters and enhancers for GC09P087261 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I087259 Enhancer 0.8 ENCODE dbSUPER 550.8 -0.6 -607 1.3 PKNOX1 ZNF189 JUNB MZF1 EBF1 BATF IRF4 POLR2A GLIS1 IKZF1 GC09P087261 ENSG00000212421 C9orf170 LOC105376126
GH09I087254 Enhancer 0.6 ENCODE dbSUPER 0.8 -4.6 -4562 1.9 POLR2A ZNF24 GC09P087261 LOC105376126 C9orf170
GH09I087238 Enhancer 0.6 ENCODE dbSUPER 0.3 -21.5 -21511 1.4 GFI1B ZNF133 ENSG00000212421 GC09P087261 LOC105376126 C9orf170
GH09I087212 Enhancer 0.9 ENCODE 0.2 -47.8 -47794 1 ZNF529 INSM2 KLF17 FEZF1 ZNF2 RFX5 ZNF335 ZNF366 ZNF350 FOS ENSG00000212421 GC09P087261 C9orf170
GH09I087249 Enhancer 0.4 ENCODE 0.4 -11.2 -11228 0.1 LCORL NFIC NFIB GC09P087261 LOC105376126 C9orf170
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P087261 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P087261 Gene

Genomic Locations for GC09P087261 Gene
chr9:87,260,449-87,260,585
(GRCh38/hg38)
Size:
137 bases
Orientation:
Plus strand

Genomic View for GC09P087261 Gene

Genes around GC09P087261 on UCSC Golden Path with GeneCards custom track

GC09P087261 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P087261 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P087261 Gene

Proteins for GC09P087261 Gene

Post-translational modifications for GC09P087261 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P087261 Gene

Domains & Families for GC09P087261 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P087261 Gene

Function for GC09P087261 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P087261 Gene

Localization for GC09P087261 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P087261 Gene

Pathways & Interactions for GC09P087261 Gene

SuperPathways for GC09P087261 Gene

No Data Available

Interacting Proteins for GC09P087261 Gene

Gene Ontology (GO) - Biological Process for GC09P087261 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P087261 Gene

Drugs & Compounds for GC09P087261 Gene

No Compound Related Data Available

Transcripts for GC09P087261 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P087261 Gene

No ASD Table

Relevant External Links for GC09P087261 Gene

GeneLoc Exon Structure for
GC09P087261

No data available for mRNA/cDNA for GC09P087261 Gene

Expression for GC09P087261 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P087261 Gene

Orthologs for GC09P087261 Gene

No data available for Orthologs and Evolution for GC09P087261 Gene

Paralogs for GC09P087261 Gene

No data available for Paralogs for GC09P087261 Gene

Variants for GC09P087261 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P087261 Gene

Disorders for GC09P087261 Gene

No disorders were found for GC09P087261 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P087261 Gene

Publications for GC09P087261 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

Products for GC09P087261 Gene

Sources for GC09P087261 Gene

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