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Aliases for GC09P078450 Gene

Subcategory (RNA class) for GC09P078450 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC09P078450 Gene

No Aliases found

ORGUL Members for GC09P078450 Gene

No data available for External Ids for GC09P078450 Gene

Summaries for GC09P078450 Gene

GeneCards Summary for GC09P078450 Gene

GC09P078450 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P078450 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P078450

Additional gene information for GC09P078450 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P078450 Gene

Genomics for GC09P078450 Gene

GeneHancer (GH) Regulatory Elements for GC09P078450 Gene

Promoters and enhancers for GC09P078450 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I078449 Enhancer 0.6 UCNEbase 550.8 +0.2 218 0.5 POLR2A TCF7L2 GC09P078450 PIR55741
GH09I078437 Enhancer 1.7 VISTA UCNEbase Ensembl ENCODE 0.4 -9.8 -9812 4 CTCF ZNF654 MAX TRIM22 REST RAD21 SP1 ZNF610 POLR2A ZNF547 GC09P078450 GC09M078379
GH09I078395 Enhancer 1.4 VISTA UCNEbase ENCODE 0.2 -51.5 -51505 3.2 SOX13 FOXA2 RXRA POLR2A RCOR2 NR2F6 HMG20A ZNF644 NR2F2 GC09M078379 GC09P078450
GH09I078406 Enhancer 0.9 ENCODE 0.3 -42.1 -42104 0.4 FOXA2 MLX ARID4B ZSCAN9 RAD21 RARA ETS1 YY1 CREM THAP11 PSAT1 GC09M078379 GC09P078450
GH09I078540 Enhancer 0.6 ENCODE 0.2 +91.0 91000 0.2 FOXA2 RFX1 RXRA MAX REST GABPA FOXA1 SP1 JUND GATA3 PIR55741 GC09P078450
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P078450 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P078450 Gene

Genomic Locations for GC09P078450 Gene
chr9:78,449,080-78,449,558
(GRCh38/hg38)
Size:
479 bases
Orientation:
Plus strand

Genomic View for GC09P078450 Gene

Genes around GC09P078450 on UCSC Golden Path with GeneCards custom track

GC09P078450 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P078450 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P078450 Gene

ORGUL Member Location for GC09P078450 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P078450 Gene

Proteins for GC09P078450 Gene

Post-translational modifications for GC09P078450 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P078450 Gene

Domains & Families for GC09P078450 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P078450 Gene

Function for GC09P078450 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P078450 Gene

Localization for GC09P078450 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P078450 Gene

Pathways & Interactions for GC09P078450 Gene

SuperPathways for GC09P078450 Gene

No Data Available

Interacting Proteins for GC09P078450 Gene

Gene Ontology (GO) - Biological Process for GC09P078450 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P078450 Gene

Drugs & Compounds for GC09P078450 Gene

No Compound Related Data Available

Transcripts for GC09P078450 Gene

fRNAdb Secondary structures for GC09P078450 Gene

  • FR347389
  • FR286308

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P078450 Gene

No ASD Table

Relevant External Links for GC09P078450 Gene

GeneLoc Exon Structure for
GC09P078450

No data available for mRNA/cDNA for GC09P078450 Gene

Expression for GC09P078450 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P078450 Gene

Orthologs for GC09P078450 Gene

No data available for Orthologs and Evolution for GC09P078450 Gene

Paralogs for GC09P078450 Gene

No data available for Paralogs for GC09P078450 Gene

Variants for GC09P078450 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P078450 Gene

Disorders for GC09P078450 Gene

No disorders were found for GC09P078450 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P078450 Gene

Publications for GC09P078450 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC09P078450 Gene

Sources for GC09P078450 Gene

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