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Aliases for GC09P000558 Gene

Subcategory (RNA class) for GC09P000558 Gene


Quality Score for this RNA gene is


Aliases for GC09P000558 Gene

No Aliases found

ORGUL Members for GC09P000558 Gene

No data available for External Ids for GC09P000558 Gene

Summaries for GC09P000558 Gene

GeneCards Summary for GC09P000558 Gene

GC09P000558 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09P000558 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC09P000558 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P000558 Gene

Genomics for GC09P000558 Gene

GeneHancer (GH) Regulatory Elements for GC09P000558 Gene

Promoters and enhancers for GC09P000558 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I000556 Enhancer 0.8 Ensembl ENCODE 550.8 -1.4 -1361 2.4 SOX5 SOX13 FOXA2 SP1 ATF3 POLR2A ZBTB33 FOSL2 PRDM1 EZH2 GC09P000558 RNU6-1327P KANK1 ENSG00000226403
GH09I000567 Enhancer 0.8 ENCODE dbSUPER 0.4 +9.8 9801 3.1 NR2F1 DPF2 IRF4 ZNF217 IKZF1 HNF4A IKZF2 SPI1 DMRT1 GC09P000558 EIF1P1 KANK1
GH09I000612 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +55.1 55058 2.7 FOXA2 MLX ZFP64 ARID4B ZNF48 YY1 ZNF143 ZNF548 RXRA REST ENSG00000227914 CBWD1 DOCK8 KANK1 C9orf66 EIF1P1 GC09P000558
GH09I000589 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +31.1 31087 1.2 ZNF449 CEBPB NR2F2 ZNF335 ATF3 PRDM10 WT1 ZBTB17 DMRT1 GC09P000558 EIF1P1 KANK1
GH09I000621 Promoter/Enhancer 1.4 EPDnew FANTOM5 Ensembl 0.2 +62.8 62792 0.9 ATF3 RXRA ATF7 HNF4A MAFK RAD21 KANK1 ENSG00000227914 DOCK8 C9orf66 EIF1P1 GC09P000558
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P000558 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P000558 Gene

Genomic Locations for GC09P000558 Gene
102 bases
Plus strand

Genomic View for GC09P000558 Gene

Genes around GC09P000558 on UCSC Golden Path with GeneCards custom track

GC09P000558 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P000558 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P000558 Gene

Proteins for GC09P000558 Gene

Post-translational modifications for GC09P000558 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P000558 Gene

Domains & Families for GC09P000558 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P000558 Gene

Function for GC09P000558 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P000558 Gene

Localization for GC09P000558 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P000558 Gene

Pathways & Interactions for GC09P000558 Gene

SuperPathways for GC09P000558 Gene

No Data Available

Interacting Proteins for GC09P000558 Gene

Gene Ontology (GO) - Biological Process for GC09P000558 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC09P000558 Gene

Drugs & Compounds for GC09P000558 Gene

No Compound Related Data Available

Transcripts for GC09P000558 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P000558 Gene

No ASD Table

Relevant External Links for GC09P000558 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC09P000558 Gene

Expression for GC09P000558 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P000558 Gene

Orthologs for GC09P000558 Gene

No data available for Orthologs and Evolution for GC09P000558 Gene

Paralogs for GC09P000558 Gene

No data available for Paralogs for GC09P000558 Gene

Variants for GC09P000558 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P000558 Gene

Disorders for GC09P000558 Gene

No disorders were found for GC09P000558 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P000558 Gene

Publications for GC09P000558 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC09P000558 Gene

Sources for GC09P000558 Gene

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