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Aliases for GC09P000245 Gene

Subcategory (RNA class) for GC09P000245 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for GC09P000245 Gene

No Aliases found

No data available for External Ids for GC09P000245 Gene

Summaries for GC09P000245 Gene

GeneCards Summary for GC09P000245 Gene

GC09P000245 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC09P000245 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC09P000245

Additional gene information for GC09P000245 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P000245 Gene

Genomics for GC09P000245 Gene

GeneHancer (GH) Regulatory Elements for GC09P000245 Gene

Promoters and enhancers for GC09P000245 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I000244 Enhancer 0.5 dbSUPER 550.8 -0.1 -110 1.9 ATF4 PKNOX1 TRIM24 CEBPG NR2C2 GC09P000245 CBWD1 DOCK8 ENSG00000235880 C9orf66 GC09M000227 GC09M000242
GH09I000249 Enhancer 0.7 ENCODE dbSUPER 0.8 +3.8 3819 0.3 CTBP1 ATF1 NFIC PKNOX1 TEAD4 ZEB2 DOCK8 C9orf66 GC09P000245 ENSG00000235880 GC09M000242
GH09I000251 Enhancer 0.6 ENCODE dbSUPER 0.8 +4.9 4879 0.2 RXRA NR2F2 ZNF395 C9orf66 DOCK8 GC09P000245 ENSG00000235880 GC09M000242
GH09I000257 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +12.7 12684 1 ZNF184 TAL1 CEBPB MAX CBFA2T3 ZBTB33 MYC ENSG00000235880 CBWD1 C9orf66 DOCK8 GC09P000245 GC09M000242
GH09I000259 Enhancer 0.9 ENCODE dbSUPER 0.4 +14.6 14631 1.1 HDAC1 MEIS2 LEF1 TEAD4 TAL1 TCF12 POLR2A NCOR1 CBFA2T2 ZNF214 ENSG00000235880 CBWD1 C9orf66 DOCK8 GC09P000245 GC09M000242
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P000245 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P000245 Gene

Genomic Locations for GC09P000245 Gene
chr9:245,417-245,450
(GRCh38/hg38)
Size:
34 bases
Orientation:
Plus strand
chr9:245,417-245,450
(GRCh37/hg19)

Genomic View for GC09P000245 Gene

Genes around GC09P000245 on UCSC Golden Path with GeneCards custom track

GC09P000245 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P000245 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P000245 Gene

ORGUL Member Location for GC09P000245 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P000245 Gene

Proteins for GC09P000245 Gene

Post-translational modifications for GC09P000245 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P000245 Gene

Domains & Families for GC09P000245 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P000245 Gene

Function for GC09P000245 Gene

Phenotypes From GWAS Catalog for GC09P000245 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P000245 Gene

Localization for GC09P000245 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P000245 Gene

Pathways & Interactions for GC09P000245 Gene

SuperPathways for GC09P000245 Gene

No Data Available

Interacting Proteins for GC09P000245 Gene

Gene Ontology (GO) - Biological Process for GC09P000245 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P000245 Gene

Drugs & Compounds for GC09P000245 Gene

No Compound Related Data Available

Transcripts for GC09P000245 Gene

fRNAdb Secondary structures for GC09P000245 Gene

  • FR304775
  • FR050780
  • FR316975

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P000245 Gene

No ASD Table

Relevant External Links for GC09P000245 Gene

GeneLoc Exon Structure for
GC09P000245

No data available for mRNA/cDNA for GC09P000245 Gene

Expression for GC09P000245 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P000245 Gene

Orthologs for GC09P000245 Gene

No data available for Orthologs and Evolution for GC09P000245 Gene

Paralogs for GC09P000245 Gene

No data available for Paralogs for GC09P000245 Gene

Variants for GC09P000245 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P000245 Gene

Disorders for GC09P000245 Gene

No disorders were found for GC09P000245 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P000245 Gene

Publications for GC09P000245 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC09P000245 Gene

Sources for GC09P000245 Gene

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