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Aliases for GC09M107664 Gene

Subcategory (RNA class) for GC09M107664 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09M107664 Gene

No Aliases found

ORGUL Members for GC09M107664 Gene

No data available for External Ids for GC09M107664 Gene

Summaries for GC09M107664 Gene

GeneCards Summary for GC09M107664 Gene

GC09M107664 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M107664 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC09M107664 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M107664 Gene

Genomics for GC09M107664 Gene

GeneHancer (GH) Regulatory Elements for GC09M107664 Gene

Promoters and enhancers for GC09M107664 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I107673 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -11.8 -11777 3 ATF1 RAD21 ZBTB40 ZNF766 CAVIN1 ZBTB11 HDAC8 ZNF592 ZNF148 SP1 KLF4 GC09M107664 RNU6-996P LOC105376207
GH09I107667 Enhancer 0.5 Ensembl ENCODE 0.8 -4.4 -4356 1.2 MAX GC09M107664 RNU6-996P LOC105376207
GH09I107644 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +18.1 18106 1.2 RXRA MAX REST RAD21 YY1 JUND ATF3 HNF4A ZBTB33 MAFK RNU6-996P GC09M107664 LOC105376205
GH09I107636 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +24.9 24860 3.5 USF1 TAF1 JUN NR2F1 MAX SIN3A RAD21 NR2F2 GABPA YY1 RNU6-996P KLF4 GC09M107664 LOC105376205
GH09I107706 Enhancer 1 Ensembl ENCODE 0.3 -44.4 -44351 1.8 HDAC1 HDGF ATF1 ZBTB40 TCF12 FOS ATF7 SMARCA5 CEBPB ZEB2 LOC105376207 GC09M107664 RNU6-996P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09M107664 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09M107664 Gene

Genomic Locations for GC09M107664 Gene
chr9:107,663,139-107,663,246
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC09M107664 Gene

Genes around GC09M107664 on UCSC Golden Path with GeneCards custom track

GC09M107664 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M107664 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M107664 Gene

Proteins for GC09M107664 Gene

Post-translational modifications for GC09M107664 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M107664 Gene

Domains & Families for GC09M107664 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M107664 Gene

Function for GC09M107664 Gene

Phenotypes From GWAS Catalog for GC09M107664 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M107664 Gene

Localization for GC09M107664 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M107664 Gene

Pathways & Interactions for GC09M107664 Gene

SuperPathways for GC09M107664 Gene

No Data Available

Interacting Proteins for GC09M107664 Gene

Gene Ontology (GO) - Biological Process for GC09M107664 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M107664 Gene

Drugs & Compounds for GC09M107664 Gene

No Compound Related Data Available

Transcripts for GC09M107664 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M107664 Gene

No ASD Table

Relevant External Links for GC09M107664 Gene

GeneLoc Exon Structure for
GC09M107664

No data available for mRNA/cDNA for GC09M107664 Gene

Expression for GC09M107664 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M107664 Gene

Orthologs for GC09M107664 Gene

No data available for Orthologs and Evolution for GC09M107664 Gene

Paralogs for GC09M107664 Gene

No data available for Paralogs for GC09M107664 Gene

Variants for GC09M107664 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09M107664 Gene

Disorders for GC09M107664 Gene

No disorders were found for GC09M107664 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M107664 Gene

Publications for GC09M107664 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC09M107664 Gene

Sources for GC09M107664 Gene

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