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Aliases for GC09M081726 Gene

Subcategory (RNA class) for GC09M081726 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC09M081726 Gene

No Aliases found

ORGUL Members for GC09M081726 Gene

No data available for External Ids for GC09M081726 Gene

Summaries for GC09M081726 Gene

GeneCards Summary for GC09M081726 Gene

GC09M081726 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M081726 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC09M081726 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M081726 Gene

Genomics for GC09M081726 Gene

GeneHancer (GH) Regulatory Elements for GC09M081726 Gene

Promoters and enhancers for GC09M081726 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J081725 Enhancer 1 Ensembl ENCODE 600.7 +0.6 586 0.5 SP7 MZF1 PKNOX1 ZBTB8A ZIC2 ZEB2 ZNF639 ZNF629 PATZ1 ZNF692 GC09M081726 RNU6-1035P LOC101927502 PIR32671
GH09J081724 Enhancer 0.8 ENCODE 600.7 +1.0 963 0.1 SP7 MZF1 ZBTB8A ZIC2 ZEB2 ZNF639 KLF7 ZNF629 PATZ1 ZNF692 GC09M081726 RNU6-1035P LOC101927502 PIR32671
GH09J081717 Enhancer 0.9 Ensembl ENCODE 0.4 +7.7 7748 2.4 NCOA3 TARDBP CTBP1 EZH2 NFE2 ZNF217 DPF2 CUX1 GATAD2B GATA3 LOC101927502 TLE1 GC09M081726 RNU6-1035P PIR32671
GH09J081737 Enhancer 0.8 Ensembl ENCODE 0.4 -12.5 -12452 2.8 ELF3 MAFK ELF1 FOSL2 SP1 JUND USF1 FOS USF2 SREBF1 TLE1 LOC101927502 RNU6-1035P PIR57965 GC09M081726
GH09J081694 Enhancer 0.8 Ensembl ENCODE 0.3 +31.0 30994 1.7 MZF1 POLR2A PRDM10 TCF7L2 ZBTB48 FOXA2 ZNF580 RCOR1 SREBF1 PIR32671 RNU6-1035P LOC101927502 GC09M081726
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC09M081726 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09M081726 Gene

Genomic Locations for GC09M081726 Gene
chr9:81,725,242-81,725,349
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC09M081726 Gene

Genes around GC09M081726 on UCSC Golden Path with GeneCards custom track

GC09M081726 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M081726 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M081726 Gene

Proteins for GC09M081726 Gene

Post-translational modifications for GC09M081726 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M081726 Gene

Domains & Families for GC09M081726 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M081726 Gene

Function for GC09M081726 Gene

Phenotypes From GWAS Catalog for GC09M081726 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M081726 Gene

Localization for GC09M081726 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M081726 Gene

Pathways & Interactions for GC09M081726 Gene

PathCards logo

SuperPathways for GC09M081726 Gene

No Data Available

Interacting Proteins for GC09M081726 Gene

Gene Ontology (GO) - Biological Process for GC09M081726 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M081726 Gene

Drugs & Compounds for GC09M081726 Gene

No Compound Related Data Available

Transcripts for GC09M081726 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M081726 Gene

No ASD Table

Relevant External Links for GC09M081726 Gene

GeneLoc Exon Structure for
GC09M081726

No data available for mRNA/cDNA for GC09M081726 Gene

Expression for GC09M081726 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M081726 Gene

Orthologs for GC09M081726 Gene

No data available for Orthologs and Evolution for GC09M081726 Gene

Paralogs for GC09M081726 Gene

No data available for Paralogs for GC09M081726 Gene

Variants for GC09M081726 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09M081726 Gene

Disorders for GC09M081726 Gene

No disorders were found for GC09M081726 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M081726 Gene

Publications for GC09M081726 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC09M081726 Gene

Products for GC09M081726 Gene

Sources for GC09M081726 Gene

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