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Aliases for GC09M068936 Gene

Subcategory (RNA class) for GC09M068936 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC09M068936 Gene

No Aliases found

ORGUL Members for GC09M068936 Gene

No data available for External Ids for GC09M068936 Gene

Summaries for GC09M068936 Gene

GeneCards Summary for GC09M068936 Gene

GC09M068936 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M068936 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC09M068936 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M068936 Gene

Genomics for GC09M068936 Gene

GeneHancer (GH) Regulatory Elements for GC09M068936 Gene

Promoters and enhancers for GC09M068936 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J068935 Enhancer 0.4 Ensembl dbSUPER 600.7 -1.0 -1022 3.6 GC09M068936 RNU6-820P FAM122A ENSG00000236733 PIP5K1B PRKACG GC09P068929 LOC101927069
GH09J068933 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 +2.4 2364 2 SP1 RELA CREM ZBED1 IKZF1 IKZF2 CBFB DPF2 EED RUNX3 PIP5K1B PGM5 FAM122A ENSG00000236733 PGM5-AS1 PRKACG GC09M068936 GC09P068929 RNU6-820P
GH09J068952 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.5 -15521 4.6 SP1 CREM MLLT1 RAD21 IKZF1 IKZF2 ZNF143 CTCF TRIM22 SCRT2 PIP5K1B PRKACG FAM122A TJP2 RNU6-820P GC09M068936 LOC101927069
GH09J068969 Enhancer 1.1 Ensembl ENCODE 0.3 -34.0 -33999 1.2 CC2D1A ELF3 CEBPG RERE TFE3 SP7 HNF1A PPARG SP5 KAT8 PIP5K1B RNU6-820P PRKACG LOC101927069 GC09M068936
GH09J068947 Enhancer 0.8 ENCODE dbSUPER 0.4 -12.2 -12220 0.6 ZBED1 IKZF1 IKZF2 RUNX3 JUNB BATF ATF2 NFATC1 PIP5K1B PRKACG FAM122A GC09M068936 RNU6-820P LOC101927069
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC09M068936 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09M068936 Gene

Genomic Locations for GC09M068936 Gene
chr9:68,935,872-68,935,979
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC09M068936 Gene

Genes around GC09M068936 on UCSC Golden Path with GeneCards custom track

GC09M068936 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M068936 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M068936 Gene

Proteins for GC09M068936 Gene

Post-translational modifications for GC09M068936 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M068936 Gene

Domains & Families for GC09M068936 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M068936 Gene

Function for GC09M068936 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M068936 Gene

Localization for GC09M068936 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M068936 Gene

Pathways & Interactions for GC09M068936 Gene

PathCards logo

SuperPathways for GC09M068936 Gene

No Data Available

Interacting Proteins for GC09M068936 Gene

Gene Ontology (GO) - Biological Process for GC09M068936 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M068936 Gene

Drugs & Compounds for GC09M068936 Gene

No Compound Related Data Available

Transcripts for GC09M068936 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M068936 Gene

No ASD Table

Relevant External Links for GC09M068936 Gene

GeneLoc Exon Structure for
GC09M068936

No data available for mRNA/cDNA for GC09M068936 Gene

Expression for GC09M068936 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M068936 Gene

Orthologs for GC09M068936 Gene

No data available for Orthologs and Evolution for GC09M068936 Gene

Paralogs for GC09M068936 Gene

No data available for Paralogs for GC09M068936 Gene

Variants for GC09M068936 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09M068936 Gene

Disorders for GC09M068936 Gene

No disorders were found for GC09M068936 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M068936 Gene

Publications for GC09M068936 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC09M068936 Gene

Products for GC09M068936 Gene

Sources for GC09M068936 Gene

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