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Aliases for GC08P143506 Gene

Subcategory (RNA class) for GC08P143506 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC08P143506 Gene

No Aliases found

ORGUL Members for GC08P143506 Gene

No data available for External Ids for GC08P143506 Gene

Summaries for GC08P143506 Gene

GeneCards Summary for GC08P143506 Gene

GC08P143506 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08P143506 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P143506

Additional gene information for GC08P143506 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P143506 Gene

Genomics for GC08P143506 Gene

GeneHancer (GH) Regulatory Elements for GC08P143506 Gene

Promoters and enhancers for GC08P143506 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I143506 Enhancer 0.8 UCNEbase dbSUPER 550.8 +0.2 188 0.3 POLR2A ZIC2 GC08P143506 GC08P143575 ZC3H3
GH08I143508 Enhancer 1 ENCODE dbSUPER 0.8 +2.4 2403 1.1 FOXA2 MLX ARID4B DMAP1 RAD21 THRB ZNF48 ZSCAN9 RARA CREM GC08P143506 ZC3H3 GC08P143575
GH08I143514 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.3 12270 7.4 PKNOX1 MLX ZFP64 FEZF1 ETS1 GLIS2 ATF7 RXRA SP5 ZHX2 ENSG00000254859 GSDMD CPSF1 CYHR1 ZNF707 SHARPIN TOP1MT NAPRT ZC3H3 ENSG00000253931
GH08I143540 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 +35.1 35085 2.2 PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 POLR2B ZNF766 ZC3H3 ENSG00000254144 GC08P143575 RN7SKP175 ENSG00000254859 GSDMD CPSF1 VPS28 ZNF623 SLC52A2
GH08I143493 Enhancer 1.5 UCNEbase Ensembl ENCODE dbSUPER 0.4 -11.9 -11867 2.6 RING1 ZIC2 ZNF335 ZFHX2 GLIS2 ZNF600 FOS ZBTB20 MAZ ZNF189 ENSG00000254859 JRK ZNF696 ZNF623 CYHR1 CPSF1 VPS28 ZC3H3 GC08P143506 PIR44330
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC08P143506 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P143506 Gene

Genomic Locations for GC08P143506 Gene
chr8:143,506,324-143,506,444
(GRCh38/hg38)
Size:
121 bases
Orientation:
Plus strand

Genomic View for GC08P143506 Gene

Genes around GC08P143506 on UCSC Golden Path with GeneCards custom track

GC08P143506 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P143506 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P143506 Gene

ORGUL Member Location for GC08P143506 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P143506 Gene

Proteins for GC08P143506 Gene

Post-translational modifications for GC08P143506 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P143506 Gene

Domains & Families for GC08P143506 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P143506 Gene

Function for GC08P143506 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P143506 Gene

Localization for GC08P143506 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P143506 Gene

Pathways & Interactions for GC08P143506 Gene

SuperPathways for GC08P143506 Gene

No Data Available

Interacting Proteins for GC08P143506 Gene

Gene Ontology (GO) - Biological Process for GC08P143506 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P143506 Gene

Drugs & Compounds for GC08P143506 Gene

No Compound Related Data Available

Transcripts for GC08P143506 Gene

fRNAdb Secondary structures for GC08P143506 Gene

  • FR383100
  • FR067143

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P143506 Gene

No ASD Table

Relevant External Links for GC08P143506 Gene

GeneLoc Exon Structure for
GC08P143506

No data available for mRNA/cDNA for GC08P143506 Gene

Expression for GC08P143506 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P143506 Gene

Orthologs for GC08P143506 Gene

No data available for Orthologs and Evolution for GC08P143506 Gene

Paralogs for GC08P143506 Gene

No data available for Paralogs for GC08P143506 Gene

Variants for GC08P143506 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P143506 Gene

Disorders for GC08P143506 Gene

No disorders were found for GC08P143506 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P143506 Gene

Publications for GC08P143506 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC08P143506 Gene

Sources for GC08P143506 Gene

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