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Aliases for GC08P115411 Gene

Subcategory (RNA class) for GC08P115411 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC08P115411 Gene

No Aliases found

ORGUL Members for GC08P115411 Gene

No data available for External Ids for GC08P115411 Gene

Summaries for GC08P115411 Gene

GeneCards Summary for GC08P115411 Gene

GC08P115411 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08P115411 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P115411

Additional gene information for GC08P115411 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P115411 Gene

Genomics for GC08P115411 Gene

GeneHancer (GH) Regulatory Elements for GC08P115411 Gene

Promoters and enhancers for GC08P115411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J115412 Enhancer 0.6 UCNEbase Ensembl 600.7 +0.0 42 1.3 GC08P115411 GC08P115500 TRPS1
GH08J115417 Enhancer 1.9 VISTA UCNEbase Ensembl ENCODE dbSUPER 0.4 +7.4 7405 5.6 POLR2A PKNOX1 NR2C1 EGR1 EHMT2 USF1 NR2C2 ZBTB11 RCOR1 CBX1 GC08P115411 GC08P115500 TRPS1
GH08J115426 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 0.4 +17.2 17155 4.5 SP1 CC2D1A CBFA2T2 ZNF148 MLLT1 GTF2F1 CSDE1 BACH1 JUND NCOA6 TRPS1 GC08P115411 GC08P115500
GH08J115447 Enhancer 1.7 UCNEbase FANTOM5 ENCODE dbSUPER 0.3 +38.6 38631 5.4 ZNF148 NFIB SP1 SMARCA4 CEBPG POLR2A PKNOX1 ZNF600 PRDM10 REST ENSG00000227170 TRPS1 GC08P115411 GC08P115500
GH08J115435 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +24.3 24305 1.4 FOS JUND JUN ZFP91 GC08P115411 GC08P115500 TRPS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC08P115411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P115411 Gene

Genomic Locations for GC08P115411 Gene
chr8:115,411,996-115,412,178
(GRCh38/hg38)
Size:
183 bases
Orientation:
Plus strand

Genomic View for GC08P115411 Gene

Genes around GC08P115411 on UCSC Golden Path with GeneCards custom track

GC08P115411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P115411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P115411 Gene

ORGUL Member Location for GC08P115411 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P115411 Gene

Proteins for GC08P115411 Gene

Post-translational modifications for GC08P115411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P115411 Gene

Domains & Families for GC08P115411 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P115411 Gene

Function for GC08P115411 Gene

Phenotypes From GWAS Catalog for GC08P115411 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P115411 Gene

Localization for GC08P115411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P115411 Gene

Pathways & Interactions for GC08P115411 Gene

PathCards logo

SuperPathways for GC08P115411 Gene

No Data Available

Interacting Proteins for GC08P115411 Gene

Gene Ontology (GO) - Biological Process for GC08P115411 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P115411 Gene

Drugs & Compounds for GC08P115411 Gene

No Compound Related Data Available

Transcripts for GC08P115411 Gene

fRNAdb Secondary structures for GC08P115411 Gene

  • FR192005
  • FR051543

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P115411 Gene

No ASD Table

Relevant External Links for GC08P115411 Gene

GeneLoc Exon Structure for
GC08P115411

No data available for mRNA/cDNA for GC08P115411 Gene

Expression for GC08P115411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P115411 Gene

Orthologs for GC08P115411 Gene

No data available for Orthologs and Evolution for GC08P115411 Gene

Paralogs for GC08P115411 Gene

No data available for Paralogs for GC08P115411 Gene

Variants for GC08P115411 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P115411 Gene

Disorders for GC08P115411 Gene

No disorders were found for GC08P115411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P115411 Gene

Publications for GC08P115411 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC08P115411 Gene

Products for GC08P115411 Gene

Sources for GC08P115411 Gene

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