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Aliases for GC08P097360 Gene

Subcategory (RNA class) for GC08P097360 Gene


Quality Score for this RNA gene is


Aliases for GC08P097360 Gene

No Aliases found

No data available for External Ids for GC08P097360 Gene

Summaries for GC08P097360 Gene

GeneCards Summary for GC08P097360 Gene

GC08P097360 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08P097360 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

View fRNAdb secondary structures for GC08P097360

Additional gene information for GC08P097360 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P097360 Gene

Genomics for GC08P097360 Gene

GeneHancer (GH) Regulatory Elements for GC08P097360 Gene

Promoters and enhancers for GC08P097360 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J097324 Enhancer 1.1 Ensembl ENCODE 0.3 -32.9 -32865 1.7 ATF1 FOXA2 TCF12 ZNF766 GATA2 ATF7 CAVIN1 ZNF592 MEF2D NFIL3 TSPYL5 GC08P097360 LOC101927066
GH08J097292 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.2 -64.6 -64593 2.3 ZNF639 BACH1 MAFG ATF2 FOSL1 JUND MAFF ZNF316 RCOR1 NFE2 TSPYL5 GC08P097360 LOC101927066
GH08J097344 Enhancer 0.4 ENCODE 0.4 -13.3 -13346 0.6 ZNF184 ATF2 TSPYL5 GC08P097360 LOC101927066
GH08J097301 Enhancer 0.2 ENCODE 0.2 -56.0 -55975 0.9 TSPYL5 GC08P097360 LOC101927066
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC08P097360 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P097360 Gene

Genomic Locations for GC08P097360 Gene
214 bases
Plus strand

Genomic View for GC08P097360 Gene

Genes around GC08P097360 on UCSC Golden Path with GeneCards custom track

GC08P097360 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P097360 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P097360 Gene

ORGUL Member Location for GC08P097360 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P097360 Gene

Proteins for GC08P097360 Gene

Post-translational modifications for GC08P097360 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P097360 Gene

Domains & Families for GC08P097360 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P097360 Gene

Function for GC08P097360 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P097360 Gene

Localization for GC08P097360 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P097360 Gene

Pathways & Interactions for GC08P097360 Gene

SuperPathways for GC08P097360 Gene

No Data Available

Interacting Proteins for GC08P097360 Gene

Gene Ontology (GO) - Biological Process for GC08P097360 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC08P097360 Gene

Drugs & Compounds for GC08P097360 Gene

No Compound Related Data Available

Transcripts for GC08P097360 Gene

fRNAdb Secondary structures for GC08P097360 Gene

  • FR406606
  • FR401904

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P097360 Gene

No ASD Table

Relevant External Links for GC08P097360 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC08P097360 Gene

Expression for GC08P097360 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P097360 Gene

Orthologs for GC08P097360 Gene

No data available for Orthologs and Evolution for GC08P097360 Gene

Paralogs for GC08P097360 Gene

No data available for Paralogs for GC08P097360 Gene

Variants for GC08P097360 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P097360 Gene

Disorders for GC08P097360 Gene

No disorders were found for GC08P097360 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P097360 Gene

Publications for GC08P097360 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

Products for GC08P097360 Gene

Sources for GC08P097360 Gene

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