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Aliases for GC08P071048 Gene

Subcategory (RNA class) for GC08P071048 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC08P071048 Gene

No Aliases found

ORGUL Members for GC08P071048 Gene

No data available for External Ids for GC08P071048 Gene

Summaries for GC08P071048 Gene

GeneCards Summary for GC08P071048 Gene

GC08P071048 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08P071048 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P071048

Additional gene information for GC08P071048 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P071048 Gene

Genomics for GC08P071048 Gene

GeneHancer (GH) Regulatory Elements for GC08P071048 Gene

Promoters and enhancers for GC08P071048 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J071044 Enhancer 0.8 Ensembl ENCODE 0.7 -2.5 -2481 4 JUND FOS USF2 RCOR1 RAD21 ATF3 MYC MAX XKR9 GC08P071048 GC08M070811 ENSG00000285579
GH08J071052 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 +5.6 5619 5.8 NFIB SP1 POLR2A PKNOX1 RUNX3 JUND JUNB RCOR1 HNF4A RXRA XKR9 TRAM1 LACTB2 GC08P071048 LOC105375894 ENSG00000285579
GH08J071058 Enhancer 1 Ensembl ENCODE 0.4 +10.5 10471 1.3 SP7 SP1 CREB1 RXRA KLF7 ZNF629 CTBP1 FOXA2 ZNF561 HES1 TRAM1 LACTB2 GC08P071048 LOC105375894 ENSG00000285579 XKR9
GH08J071035 Enhancer 0.6 Ensembl ENCODE 0.4 -13.3 -13252 0.9 NFE2 MAFK NFE2L2 TRAM1 XKR9 GC08P071048 GC08M070811 ENSG00000285579
GH08J071112 Enhancer 0.8 Ensembl ENCODE 0.2 +63.2 63219 0.6 SP1 RXRA JUND NR2F2 HNF4A MAX REST ATF3 RAD21 LOC105375894 GC08P071048 ENSG00000285579
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC08P071048 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P071048 Gene

Genomic Locations for GC08P071048 Gene
chr8:71,048,882-71,049,202
(GRCh38/hg38)
Size:
321 bases
Orientation:
Plus strand

Genomic View for GC08P071048 Gene

Genes around GC08P071048 on UCSC Golden Path with GeneCards custom track

GC08P071048 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P071048 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P071048 Gene

ORGUL Member Location for GC08P071048 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P071048 Gene

Proteins for GC08P071048 Gene

Post-translational modifications for GC08P071048 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P071048 Gene

Domains & Families for GC08P071048 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P071048 Gene

Function for GC08P071048 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P071048 Gene

Localization for GC08P071048 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P071048 Gene

Pathways & Interactions for GC08P071048 Gene

PathCards logo

SuperPathways for GC08P071048 Gene

No Data Available

Interacting Proteins for GC08P071048 Gene

Gene Ontology (GO) - Biological Process for GC08P071048 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P071048 Gene

Drugs & Compounds for GC08P071048 Gene

No Compound Related Data Available

Transcripts for GC08P071048 Gene

fRNAdb Secondary structures for GC08P071048 Gene

  • FR371059
  • FR292427

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P071048 Gene

No ASD Table

Relevant External Links for GC08P071048 Gene

GeneLoc Exon Structure for
GC08P071048

No data available for mRNA/cDNA for GC08P071048 Gene

Expression for GC08P071048 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P071048 Gene

Orthologs for GC08P071048 Gene

No data available for Orthologs and Evolution for GC08P071048 Gene

Paralogs for GC08P071048 Gene

No data available for Paralogs for GC08P071048 Gene

Variants for GC08P071048 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P071048 Gene

Disorders for GC08P071048 Gene

No disorders were found for GC08P071048 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P071048 Gene

Publications for GC08P071048 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC08P071048 Gene

Products for GC08P071048 Gene

Sources for GC08P071048 Gene

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