Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC08P058884 Gene

Subcategory (RNA class) for GC08P058884 Gene

undefined

Quality Score for this RNA gene is

13.4

Aliases for GC08P058884 Gene

No Aliases found

ORGUL Members for GC08P058884 Gene

No data available for External Ids for GC08P058884 Gene

Summaries for GC08P058884 Gene

GeneCards Summary for GC08P058884 Gene

GC08P058884 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08P058884 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P058884

Additional gene information for GC08P058884 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P058884 Gene

Genomics for GC08P058884 Gene

GeneHancer (GH) Regulatory Elements for GC08P058884 Gene

Promoters and enhancers for GC08P058884 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J058881 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 -2.3 -2253 1.2 MAX CEBPB ATF2 OSR2 POLR2A FOS ATF7 IKZF2 MYC RUNX3 RNU4-50P GC08P058884 GC08M058815 TOX
GH08J058855 Enhancer 1.6 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.3 -26.7 -26678 4.6 PKNOX1 CBX5 RCOR1 RUNX3 CEBPB SP1 MAFF NFIC IKZF1 NR2C1 TOX GC08P058884 RNU4-50P GC08M058815
GH08J058879 Enhancer 0.6 ENCODE dbSUPER 0.7 -4.8 -4845 0.9 JUND POLR2A GC08P058884 RNU4-50P GC08M058815 TOX
GH08J058849 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -33.8 -33780 2.4 SMARCC1 JUN USF2 ZC3H11A CEBPB EP300 GTF3C2 JUND POLR2A NFYB RPS26P7 NSMAF TOX GC08P058884 GC08M058815 RNU4-50P
GH08J058841 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -42.1 -42143 2 HDAC1 PKNOX1 ARNT ZNF766 EGR1 RCOR1 FOS SMARCC1 CEBPB ZNF592 TOX GC08M058815 RNU4-50P GC08P058884
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC08P058884 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P058884 Gene

Genomic Locations for GC08P058884 Gene
chr8:58,884,390-58,884,539
(GRCh38/hg38)
Size:
150 bases
Orientation:
Plus strand

Genomic View for GC08P058884 Gene

Genes around GC08P058884 on UCSC Golden Path with GeneCards custom track

GC08P058884 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P058884 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P058884 Gene

ORGUL Member Location for GC08P058884 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P058884 Gene

Proteins for GC08P058884 Gene

Post-translational modifications for GC08P058884 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P058884 Gene

Domains & Families for GC08P058884 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P058884 Gene

Function for GC08P058884 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P058884 Gene

Localization for GC08P058884 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P058884 Gene

Pathways & Interactions for GC08P058884 Gene

SuperPathways for GC08P058884 Gene

No Data Available

Interacting Proteins for GC08P058884 Gene

Gene Ontology (GO) - Biological Process for GC08P058884 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P058884 Gene

Drugs & Compounds for GC08P058884 Gene

No Compound Related Data Available

Transcripts for GC08P058884 Gene

fRNAdb Secondary structures for GC08P058884 Gene

  • FR364570
  • FR104019

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P058884 Gene

No ASD Table

Relevant External Links for GC08P058884 Gene

GeneLoc Exon Structure for
GC08P058884

No data available for mRNA/cDNA for GC08P058884 Gene

Expression for GC08P058884 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P058884 Gene

Orthologs for GC08P058884 Gene

No data available for Orthologs and Evolution for GC08P058884 Gene

Paralogs for GC08P058884 Gene

No data available for Paralogs for GC08P058884 Gene

Variants for GC08P058884 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P058884 Gene

Disorders for GC08P058884 Gene

No disorders were found for GC08P058884 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P058884 Gene

Publications for GC08P058884 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC08P058884 Gene

Sources for GC08P058884 Gene

Content
Loading form....