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Aliases for GC08P058801 Gene

Subcategory (RNA class) for GC08P058801 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC08P058801 Gene

No Aliases found

ORGUL Members for GC08P058801 Gene

No data available for External Ids for GC08P058801 Gene

Summaries for GC08P058801 Gene

GeneCards Summary for GC08P058801 Gene

GC08P058801 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08P058801 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P058801

Additional gene information for GC08P058801 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P058801 Gene

Genomics for GC08P058801 Gene

GeneHancer (GH) Regulatory Elements for GC08P058801 Gene

Promoters and enhancers for GC08P058801 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J058799 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 600.7 -0.4 -355 3.6 ZNF652 SP1 ZNF148 TRIM24 RELA CREM MLLT1 ZBED1 IKZF1 POLR2A GC08P058801 TOX ENSG00000167912 LOC105375858
GH08J058807 Enhancer 1.3 UCNEbase ENCODE dbSUPER 0.4 +6.2 6212 1.8 CC2D1A CTCF EGR1 RAD21 ARID2 ZNF143 REST LARP7 TRIM22 SCRT2 GC08M058815 GC08P058801 RNU4-50P TOX
GH08J058812 Enhancer 1 UCNEbase Ensembl dbSUPER 0.4 +9.6 9567 0.8 RCOR1 FOXA1 GC08M058815 RNU4-50P GC08P058801 TOX
GH08J058800 Enhancer 0.6 ENCODE dbSUPER 0.7 -2.4 -2417 0.2 IKZF2 RUNX3 GC08P058801 LOC105375858
GH08J058798 Enhancer 0.5 FANTOM5 dbSUPER 0.7 -3.6 -3576 0.3 IKZF1 ENSG00000167912 GC08P058801 LOC105375858
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC08P058801 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P058801 Gene

Genomic Locations for GC08P058801 Gene
chr8:58,801,834-58,801,954
(GRCh38/hg38)
Size:
121 bases
Orientation:
Plus strand

Genomic View for GC08P058801 Gene

Genes around GC08P058801 on UCSC Golden Path with GeneCards custom track

GC08P058801 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P058801 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P058801 Gene

ORGUL Member Location for GC08P058801 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P058801 Gene

Proteins for GC08P058801 Gene

Post-translational modifications for GC08P058801 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P058801 Gene

Domains & Families for GC08P058801 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P058801 Gene

Function for GC08P058801 Gene

Phenotypes From GWAS Catalog for GC08P058801 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P058801 Gene

Localization for GC08P058801 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P058801 Gene

Pathways & Interactions for GC08P058801 Gene

PathCards logo

SuperPathways for GC08P058801 Gene

No Data Available

Interacting Proteins for GC08P058801 Gene

Gene Ontology (GO) - Biological Process for GC08P058801 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P058801 Gene

Drugs & Compounds for GC08P058801 Gene

No Compound Related Data Available

Transcripts for GC08P058801 Gene

fRNAdb Secondary structures for GC08P058801 Gene

  • FR289725
  • FR339528

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P058801 Gene

No ASD Table

Relevant External Links for GC08P058801 Gene

GeneLoc Exon Structure for
GC08P058801

No data available for mRNA/cDNA for GC08P058801 Gene

Expression for GC08P058801 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P058801 Gene

Orthologs for GC08P058801 Gene

No data available for Orthologs and Evolution for GC08P058801 Gene

Paralogs for GC08P058801 Gene

No data available for Paralogs for GC08P058801 Gene

Variants for GC08P058801 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P058801 Gene

Disorders for GC08P058801 Gene

No disorders were found for GC08P058801 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P058801 Gene

Publications for GC08P058801 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC08P058801 Gene

Products for GC08P058801 Gene

Sources for GC08P058801 Gene

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