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Aliases for GC08P032259 Gene

Subcategory (RNA class) for GC08P032259 Gene


Quality Score for this RNA gene is


Aliases for GC08P032259 Gene

No Aliases found

ORGUL Members for GC08P032259 Gene

No data available for External Ids for GC08P032259 Gene

Summaries for GC08P032259 Gene

GeneCards Summary for GC08P032259 Gene

GC08P032259 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC08P032259 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC08P032259 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P032259 Gene

Genomics for GC08P032259 Gene

GeneHancer (GH) Regulatory Elements for GC08P032259 Gene

Promoters and enhancers for GC08P032259 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I032225 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -28.6 -28562 5.2 CTCF JUN SIN3A REST RAD21 SP1 JUND ATF3 SMC3 FOS NRG1 GC08P032259 RNA5SP262
GH08I032245 Enhancer 0.7 ENCODE dbSUPER 0.4 -9.9 -9903 1.9 SP1 JUND FOSL2 FOS GC08P032259 RNA5SP262 NRG1
GH08I032240 Enhancer 0.7 ENCODE dbSUPER 0.4 -15.2 -15227 2 SP1 EBF1 REST FOSL2 FOS GC08P032259 RNA5SP262 NRG1
GH08I032220 Enhancer 0.8 Ensembl ENCODE 0.3 -35.8 -35794 0.6 MXI1 ZBTB21 SIN3A SP1 POLR2A GLIS1 POU5F1 EZH2 CHD2 RNA5SP262 GC08P032259 NRG1
GH08I032223 Enhancer 0.7 ENCODE dbSUPER 0.3 -32.8 -32805 0.2 CTCF ZNF654 ATF3 TRIM22 ZNF143 SMC3 RAD21 GC08P032259 RNA5SP262 NRG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC08P032259 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P032259 Gene

Genomic Locations for GC08P032259 Gene
129 bases
Plus strand

Genomic View for GC08P032259 Gene

Genes around GC08P032259 on UCSC Golden Path with GeneCards custom track

GC08P032259 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P032259 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P032259 Gene

Proteins for GC08P032259 Gene

Post-translational modifications for GC08P032259 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P032259 Gene

Domains & Families for GC08P032259 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P032259 Gene

Function for GC08P032259 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P032259 Gene

Localization for GC08P032259 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P032259 Gene

Pathways & Interactions for GC08P032259 Gene

SuperPathways for GC08P032259 Gene

No Data Available

Interacting Proteins for GC08P032259 Gene

Gene Ontology (GO) - Biological Process for GC08P032259 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC08P032259 Gene

Drugs & Compounds for GC08P032259 Gene

No Compound Related Data Available

Transcripts for GC08P032259 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P032259 Gene

No ASD Table

Relevant External Links for GC08P032259 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC08P032259 Gene

Expression for GC08P032259 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P032259 Gene

Orthologs for GC08P032259 Gene

No data available for Orthologs and Evolution for GC08P032259 Gene

Paralogs for GC08P032259 Gene

No data available for Paralogs for GC08P032259 Gene

Variants for GC08P032259 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P032259 Gene

Disorders for GC08P032259 Gene

No disorders were found for GC08P032259 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P032259 Gene

Publications for GC08P032259 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC08P032259 Gene

Sources for GC08P032259 Gene

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