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Aliases for GC08P017749 Gene

Subcategory (RNA class) for GC08P017749 Gene


Quality Score for this RNA gene is


Aliases for GC08P017749 Gene

No Aliases found

ORGUL Members for GC08P017749 Gene

No data available for External Ids for GC08P017749 Gene

Summaries for GC08P017749 Gene

GeneCards Summary for GC08P017749 Gene

GC08P017749 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC08P017749 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC08P017749 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P017749 Gene

Genomics for GC08P017749 Gene

GeneHancer (GH) Regulatory Elements for GC08P017749 Gene

Promoters and enhancers for GC08P017749 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J017746 Enhancer 0.5 Ensembl dbSUPER 600.7 -0.5 -516 0.4 ZSCAN5A GC08P017749 RNA5SP256 GC08P017724 MTUS1
GH08J017750 Enhancer 0.4 ENCODE dbSUPER 600.7 +1.5 1535 0.4 GC08P017749 RNA5SP256 GC08P017779 MTUS1
GH08J017748 Enhancer 0.2 Ensembl 600.7 +1.0 984 0.6 GC08P017749 RNA5SP256 MTUS1 GC08P017779
GH08J017732 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -12.2 -12240 6.5 ZSCAN21 MAFK SP7 RELA CREM IKZF1 FOSL2 RXRA ZNF600 IKZF2 ENSG00000253215 FGL1 NAT1 GC08P017724 GC08P017749 MTUS1
GH08J017740 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -5.7 -5695 4.4 SP7 NFE2L2 RCOR1 HLF GC08P017749 GC08P017724 MTUS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC08P017749 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P017749 Gene

Genomic Locations for GC08P017749 Gene
114 bases
Plus strand

Genomic View for GC08P017749 Gene

Genes around GC08P017749 on UCSC Golden Path with GeneCards custom track

GC08P017749 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P017749 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P017749 Gene

Proteins for GC08P017749 Gene

Post-translational modifications for GC08P017749 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P017749 Gene

Domains & Families for GC08P017749 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P017749 Gene

Function for GC08P017749 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P017749 Gene

Localization for GC08P017749 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P017749 Gene

Pathways & Interactions for GC08P017749 Gene

PathCards logo

SuperPathways for GC08P017749 Gene

No Data Available

Interacting Proteins for GC08P017749 Gene

Gene Ontology (GO) - Biological Process for GC08P017749 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC08P017749 Gene

Drugs & Compounds for GC08P017749 Gene

No Compound Related Data Available

Transcripts for GC08P017749 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P017749 Gene

No ASD Table

Relevant External Links for GC08P017749 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC08P017749 Gene

Expression for GC08P017749 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P017749 Gene

Orthologs for GC08P017749 Gene

No data available for Orthologs and Evolution for GC08P017749 Gene

Paralogs for GC08P017749 Gene

No data available for Paralogs for GC08P017749 Gene

Variants for GC08P017749 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P017749 Gene

Disorders for GC08P017749 Gene

No disorders were found for GC08P017749 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P017749 Gene

Publications for GC08P017749 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

No data available for External Links for GC08P017749 Gene

Products for GC08P017749 Gene

Sources for GC08P017749 Gene

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