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Aliases for GC08M058815 Gene

Subcategory (RNA class) for GC08M058815 Gene


Quality Score for this RNA gene is


Aliases for GC08M058815 Gene

No Aliases found

ORGUL Members for GC08M058815 Gene

No data available for External Ids for GC08M058815 Gene

Summaries for GC08M058815 Gene

GeneCards Summary for GC08M058815 Gene

GC08M058815 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC08M058815 Gene

  • U4_snRNA: U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6.

Additional gene information for GC08M058815 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M058815 Gene

Genomics for GC08M058815 Gene

GeneHancer (GH) Regulatory Elements for GC08M058815 Gene

Promoters and enhancers for GC08M058815 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I058813 Enhancer 0.6 dbSUPER 550.8 +0.7 725 1.4 HDAC1 MEIS2 SOX6 TEAD4 TAL1 CBFA2T3 TCF12 FOSL1 CTBP1 GATA3 GC08M058815 RNU4-50P LOC105375858 TOX
GH08I058807 Enhancer 1.5 UCNEbase Ensembl ENCODE dbSUPER 0.4 +6.5 6506 1.8 CTCF IRF4 RAD21 CHAMP1 TEAD3 CC2D1A GATA3 EGR1 ARID2 VEZF1 RNU4-50P GC08M058815 LOC105375858 TOX
GH08I058799 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +13.1 13073 3.6 ATF1 PKNOX1 IRF4 GATA2 ATF7 RUNX3 JUNB ATF4 STAT3 NBN TOX LOC100505501 GC08M058815 RNU4-50P LOC105375858
GH08I058828 Enhancer 1.4 UCNEbase Ensembl ENCODE dbSUPER 0.4 -17.3 -17347 5.8 MEIS2 PKNOX1 JUN USF2 NCOA2 MITF FOSL1 JUND FOXK2 POLR2A TOX GC08M058815 RNU4-50P GC08P058884
GH08I058812 Enhancer 0.6 UCNEbase 0.8 +2.9 2928 0.3 RCOR1 CHD2 GC08M058815 RNU4-50P LOC105375858 TOX
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC08M058815 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08M058815 Gene

Genomic Locations for GC08M058815 Gene
142 bases
Minus strand

Genomic View for GC08M058815 Gene

Genes around GC08M058815 on UCSC Golden Path with GeneCards custom track

GC08M058815 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M058815 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M058815 Gene

Proteins for GC08M058815 Gene

Post-translational modifications for GC08M058815 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M058815 Gene

Domains & Families for GC08M058815 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M058815 Gene

Function for GC08M058815 Gene

Phenotypes From GWAS Catalog for GC08M058815 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M058815 Gene

Localization for GC08M058815 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08M058815 Gene

Pathways & Interactions for GC08M058815 Gene

SuperPathways for GC08M058815 Gene

No Data Available

Interacting Proteins for GC08M058815 Gene

Gene Ontology (GO) - Biological Process for GC08M058815 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC08M058815 Gene

Drugs & Compounds for GC08M058815 Gene

No Compound Related Data Available

Transcripts for GC08M058815 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M058815 Gene

No ASD Table

Relevant External Links for GC08M058815 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC08M058815 Gene

Expression for GC08M058815 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M058815 Gene

Orthologs for GC08M058815 Gene

No data available for Orthologs and Evolution for GC08M058815 Gene

Paralogs for GC08M058815 Gene

No data available for Paralogs for GC08M058815 Gene

Variants for GC08M058815 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08M058815 Gene

Disorders for GC08M058815 Gene

No disorders were found for GC08M058815 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M058815 Gene

Publications for GC08M058815 Gene

  1. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. (PMID: 11163207) Vidovic I … Ficner R (Molecular cell 2000) 1
  2. A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles. (PMID: 9452384) Raghunathan PL … Guthrie C (Science (New York, N.Y.) 1998) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC08M058815 Gene

Sources for GC08M058815 Gene

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