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Aliases for GC07P127653 Gene

Subcategory (RNA class) for GC07P127653 Gene

lncRNA

Quality Score for this RNA gene is

5.2

Aliases for GC07P127653 Gene

No Aliases found

ORGUL Members for GC07P127653 Gene

No data available for External Ids for GC07P127653 Gene

Summaries for GC07P127653 Gene

GeneCards Summary for GC07P127653 Gene

GC07P127653 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC07P127653 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC07P127653

Additional gene information for GC07P127653 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P127653 Gene

Genomics for GC07P127653 Gene

GeneHancer (GH) Regulatory Elements for GC07P127653 Gene

Promoters and enhancers for GC07P127653 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I127650 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.4 409 3.7 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 SND1 ENSG00000240790 GC07P127653 GC07P127654 GCC1 ZNF800 ENSG00000243302 FSCN3 RPS10P15 RBM28
GH07I127654 Enhancer 0.6 ENCODE 0.8 +2.6 2560 0.3 HDAC1 MEIS2 PKNOX1 ZBTB6 CBFA2T3 MTA3 HDAC2 GMEB1 NFATC1 KDM1A GC07P127653 GC07P127654 SND1 PIR48128
GH07I127665 Enhancer 0.8 Ensembl ENCODE 0.4 +15.0 15026 3.1 JUN JUNB BATF ATF2 NFIL3 SP1 GATA3 JUND NR2C1 HMBOX1 SND1 ENSG00000273270 GC07P127653 GC07P127654 PIR48128
GH07I127683 Enhancer 0.7 ENCODE 0.3 +32.4 32361 3.5 HDGF CTCF EBF1 FEZF1 BATF ZKSCAN1 NFATC1 IKZF2 RUNX3 ZNF687 SND1 ENSG00000240790 ENSG00000273270 PIR48128 GC07P127654 GC07P127653
GH07I127673 Enhancer 0.6 Ensembl 0.3 +21.8 21822 0.4 DACH1 TSC22D4 NFXL1 ZNF645 ZBTB5 ARHGAP35 ZNF366 IKZF1 NCOA4 PRDM1 SND1 GC07P127653 GC07P127654 PIR48128
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07P127653 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07P127653 Gene

Genomic Locations for GC07P127653 Gene
chr7:127,652,179-127,652,424
(GRCh38/hg38)
Size:
246 bases
Orientation:
Plus strand

Genomic View for GC07P127653 Gene

Genes around GC07P127653 on UCSC Golden Path with GeneCards custom track

GC07P127653 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P127653 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P127653 Gene

ORGUL Member Location for GC07P127653 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P127653 Gene

Proteins for GC07P127653 Gene

Post-translational modifications for GC07P127653 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P127653 Gene

Domains & Families for GC07P127653 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P127653 Gene

Function for GC07P127653 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P127653 Gene

Localization for GC07P127653 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P127653 Gene

Pathways & Interactions for GC07P127653 Gene

SuperPathways for GC07P127653 Gene

No Data Available

Interacting Proteins for GC07P127653 Gene

Gene Ontology (GO) - Biological Process for GC07P127653 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P127653 Gene

Drugs & Compounds for GC07P127653 Gene

No Compound Related Data Available

Transcripts for GC07P127653 Gene

fRNAdb Secondary structures for GC07P127653 Gene

  • FR154036

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P127653 Gene

No ASD Table

Relevant External Links for GC07P127653 Gene

GeneLoc Exon Structure for
GC07P127653

No data available for mRNA/cDNA for GC07P127653 Gene

Expression for GC07P127653 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P127653 Gene

Orthologs for GC07P127653 Gene

No data available for Orthologs and Evolution for GC07P127653 Gene

Paralogs for GC07P127653 Gene

No data available for Paralogs for GC07P127653 Gene

Variants for GC07P127653 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07P127653 Gene

Disorders for GC07P127653 Gene

No disorders were found for GC07P127653 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P127653 Gene

Publications for GC07P127653 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC07P127653 Gene

Sources for GC07P127653 Gene

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