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Aliases for GC07P074192 Gene

Subcategory (RNA class) for GC07P074192 Gene

miRNA

Quality Score for this RNA gene is

0.2

Aliases for GC07P074192 Gene

No Aliases found

ORGUL Members for GC07P074192 Gene

No data available for External Ids for GC07P074192 Gene

Summaries for GC07P074192 Gene

GeneCards Summary for GC07P074192 Gene

GC07P074192 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC07P074192 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC07P074192

Additional gene information for GC07P074192 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P074192 Gene

Genomics for GC07P074192 Gene

GeneHancer (GH) Regulatory Elements for GC07P074192 Gene

Promoters and enhancers for GC07P074192 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I074171 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -16.3 -16341 6 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B EIF4H GC07M074172 POM121B LIMK1 RFC2 TBL2 MIR590 NSUN5 ABHD11-AS1 FKBP6
GH07I074182 Enhancer 0.9 Ensembl ENCODE 0.4 -7.6 -7595 1.6 CTCF NFIB ARID4B CEBPG RAD21 ZNF664 POLR2A SCRT2 ZNF143 SMC3 ELN-AS1 EIF4H GC07P074192 GC07M074172
GH07I074188 Enhancer 0.4 ENCODE 0.8 -3.1 -3073 0.2 JUND POLR2A SP7 LIMK1 GC07P074192 EIF4H GC07M074172
GH07I074178 Enhancer 0.7 ENCODE 0.4 -12.4 -12445 0.9 HDAC1 MEIS2 PKNOX1 ATF1 ZSCAN4 CEBPG BATF IRF9 TRIM24 ATF7 EIF4H GC07M074172 GC07P074167 GC07P074192 GC07P074132
GH07I074177 Enhancer 0.2 ENCODE 0.4 -13.3 -13264 0.1 EIF4H GC07M074172 GC07P074167 GC07P074192 GC07P074132
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07P074192 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07P074192 Gene

Genomic Locations for GC07P074192 Gene
chr7:74,191,189-74,191,294
(GRCh38/hg38)
Size:
106 bases
Orientation:
Plus strand

Genomic View for GC07P074192 Gene

Genes around GC07P074192 on UCSC Golden Path with GeneCards custom track

GC07P074192 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P074192 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P074192 Gene

ORGUL Member Location for GC07P074192 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P074192 Gene

Proteins for GC07P074192 Gene

Post-translational modifications for GC07P074192 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P074192 Gene

Domains & Families for GC07P074192 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P074192 Gene

Function for GC07P074192 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P074192 Gene

Localization for GC07P074192 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P074192 Gene

Pathways & Interactions for GC07P074192 Gene

SuperPathways for GC07P074192 Gene

No Data Available

Interacting Proteins for GC07P074192 Gene

Gene Ontology (GO) - Biological Process for GC07P074192 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P074192 Gene

Drugs & Compounds for GC07P074192 Gene

No Compound Related Data Available

Transcripts for GC07P074192 Gene

fRNAdb Secondary structures for GC07P074192 Gene

  • FR397741
  • FR205890

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P074192 Gene

No ASD Table

Relevant External Links for GC07P074192 Gene

GeneLoc Exon Structure for
GC07P074192

No data available for mRNA/cDNA for GC07P074192 Gene

Expression for GC07P074192 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P074192 Gene

Orthologs for GC07P074192 Gene

No data available for Orthologs and Evolution for GC07P074192 Gene

Paralogs for GC07P074192 Gene

No data available for Paralogs for GC07P074192 Gene

Variants for GC07P074192 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07P074192 Gene

Disorders for GC07P074192 Gene

No disorders were found for GC07P074192 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P074192 Gene

Publications for GC07P074192 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC07P074192 Gene

Sources for GC07P074192 Gene

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