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Aliases for GC07M138877 Gene

Subcategory (RNA class) for GC07M138877 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07M138877 Gene

No Aliases found

ORGUL Members for GC07M138877 Gene

No data available for External Ids for GC07M138877 Gene

Summaries for GC07M138877 Gene

GeneCards Summary for GC07M138877 Gene

GC07M138877 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07M138877 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC07M138877 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M138877 Gene

Genomics for GC07M138877 Gene

GeneHancer (GH) Regulatory Elements for GC07M138877 Gene

Promoters and enhancers for GC07M138877 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I138875 Enhancer 0.7 ENCODE 550.8 +0.2 150 2.1 MEIS2 MAX CEBPG FOSL1 CTBP1 POLR2A FOS SMARCE1 SOX6 NRF1 GC07M138877 RNU6-1272P PIR43003 KIAA1549
GH07I138889 Enhancer 1.1 Ensembl ENCODE 0.4 -14.4 -14371 3.5 PKNOX1 FOXA2 SIN3A DMAP1 FOS RXRA SMARCB1 PPARG SREBF1 ZSCAN16 KIAA1549 ZC3HAV1L GC07P138894 GC07M138877 RNU6-1272P
GH07I138886 Enhancer 1 Ensembl ENCODE 0.4 -10.1 -10121 1 ELF3 PKNOX1 FOXA2 BMI1 RAD21 CHAMP1 SCRT2 ZNF143 RCOR1 MIXL1 ZC3HAV1L GC07P138894 GC07M138877 RNU6-1272P KIAA1549
GH07I138872 Enhancer 0.4 ENCODE 0.8 +3.7 3685 0.2 KLF1 KLF4 GC07M138877 RNU6-1272P PIR43003 KIAA1549
GH07I138878 Enhancer 0.4 ENCODE 0.8 -2.4 -2426 0.8 FOXA2 FOXA1 CLEC2L GC07M138877 RNU6-1272P GC07P138894 KIAA1549
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07M138877 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07M138877 Gene

Genomic Locations for GC07M138877 Gene
chr7:138,876,358-138,876,465
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC07M138877 Gene

Genes around GC07M138877 on UCSC Golden Path with GeneCards custom track

GC07M138877 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M138877 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M138877 Gene

Proteins for GC07M138877 Gene

Post-translational modifications for GC07M138877 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M138877 Gene

Domains & Families for GC07M138877 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M138877 Gene

Function for GC07M138877 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M138877 Gene

Localization for GC07M138877 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M138877 Gene

Pathways & Interactions for GC07M138877 Gene

SuperPathways for GC07M138877 Gene

No Data Available

Interacting Proteins for GC07M138877 Gene

Gene Ontology (GO) - Biological Process for GC07M138877 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M138877 Gene

Drugs & Compounds for GC07M138877 Gene

No Compound Related Data Available

Transcripts for GC07M138877 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M138877 Gene

No ASD Table

Relevant External Links for GC07M138877 Gene

GeneLoc Exon Structure for
GC07M138877

No data available for mRNA/cDNA for GC07M138877 Gene

Expression for GC07M138877 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M138877 Gene

Orthologs for GC07M138877 Gene

No data available for Orthologs and Evolution for GC07M138877 Gene

Paralogs for GC07M138877 Gene

No data available for Paralogs for GC07M138877 Gene

Variants for GC07M138877 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07M138877 Gene

Disorders for GC07M138877 Gene

No disorders were found for GC07M138877 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M138877 Gene

Publications for GC07M138877 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC07M138877 Gene

Sources for GC07M138877 Gene

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