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Aliases for GC07M111109 Gene

Subcategory (RNA class) for GC07M111109 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for GC07M111109 Gene

No Aliases found

ORGUL Members for GC07M111109 Gene

No data available for External Ids for GC07M111109 Gene

Summaries for GC07M111109 Gene

GeneCards Summary for GC07M111109 Gene

GC07M111109 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07M111109 Gene

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

Additional gene information for GC07M111109 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M111109 Gene

Genomics for GC07M111109 Gene

GeneHancer (GH) Regulatory Elements for GC07M111109 Gene

Promoters and enhancers for GC07M111109 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J111113 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.7 -4.5 -4544 0.6 LEF1 PKNOX1 ZBTB21 JUN INSM2 BATF RELA ZNF335 ZSCAN29 ATF7 LRRN3 GC07M111109 GC07P111351 IMMP2L
GH07J111090 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 0.4 +17.1 17105 3.1 PKNOX1 INSM2 FEZF1 ZNF2 ZNF213 ZNF366 ZSCAN5C RCOR1 RUNX3 EGR2 LRRN3 GC07M111109 IMMP2L
GH07J111096 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +11.6 11638 2.4 CTCF RB1 RAD21 POLR2A ZNF143 RCOR1 FOSL2 ZHX1 ZNF654 NANOG IMMP2L LRRN3 GC07M111109
GH07J111137 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 -29.1 -29067 2 PKNOX1 FEZF1 BATF IRF4 ATF7 RCOR1 ETV6 IKZF2 RUNX3 CREM LRRN3 GC07M111109 GC07P111351 IMMP2L
GH07J111197 Enhancer 1.1 Ensembl ENCODE 0.2 -89.1 -89088 1.3 ZNF2 FOS YY2 TSHZ1 ZNF518A ATF4 SMARCA4 GLIS1 STAT3 HMBOX1 LRRN3 GC07M111109 GC07P111351 IMMP2L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07M111109 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07M111109 Gene

Genomic Locations for GC07M111109 Gene
chr7:111,109,283-111,109,357
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand

Genomic View for GC07M111109 Gene

Genes around GC07M111109 on UCSC Golden Path with GeneCards custom track

GC07M111109 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M111109 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M111109 Gene

Proteins for GC07M111109 Gene

Post-translational modifications for GC07M111109 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M111109 Gene

Domains & Families for GC07M111109 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M111109 Gene

Function for GC07M111109 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M111109 Gene

Localization for GC07M111109 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M111109 Gene

Pathways & Interactions for GC07M111109 Gene

SuperPathways for GC07M111109 Gene

No Data Available

Interacting Proteins for GC07M111109 Gene

Gene Ontology (GO) - Biological Process for GC07M111109 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M111109 Gene

Drugs & Compounds for GC07M111109 Gene

No Compound Related Data Available

Transcripts for GC07M111109 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M111109 Gene

No ASD Table

Relevant External Links for GC07M111109 Gene

GeneLoc Exon Structure for
GC07M111109

No data available for mRNA/cDNA for GC07M111109 Gene

Expression for GC07M111109 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M111109 Gene

Orthologs for GC07M111109 Gene

No data available for Orthologs and Evolution for GC07M111109 Gene

Paralogs for GC07M111109 Gene

No data available for Paralogs for GC07M111109 Gene

Variants for GC07M111109 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07M111109 Gene

Disorders for GC07M111109 Gene

No disorders were found for GC07M111109 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M111109 Gene

Publications for GC07M111109 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1

Products for GC07M111109 Gene

Sources for GC07M111109 Gene

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