Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC07M077424 Gene

Subcategory (RNA class) for GC07M077424 Gene

snoRNA

Quality Score for this RNA gene is

1

Aliases for GC07M077424 Gene

No Aliases found

ORGUL Members for GC07M077424 Gene

No data available for External Ids for GC07M077424 Gene

Summaries for GC07M077424 Gene

GeneCards Summary for GC07M077424 Gene

GC07M077424 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07M077424 Gene

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

Additional gene information for GC07M077424 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M077424 Gene

Genomics for GC07M077424 Gene

GeneHancer (GH) Regulatory Elements for GC07M077424 Gene

Promoters and enhancers for GC07M077424 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I077425 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -3.7 -3661 4.7 SOX13 JUN CHD4 CEBPG ZSCAN9 RAD21 ZNF335 PRDM10 FOS RUNX3 GSAP PTPN12 GC07M077424 LOC101927243 GCNT1P5
GH07I077421 Enhancer 0.6 Ensembl dbSUPER 0.8 +2.5 2487 0.6 ZFHX2 EGR2 GC07M077424 GSAP LOC101927243
GH07I077439 Enhancer 0.9 Ensembl dbSUPER 0.4 -16.0 -15994 0.4 SOX13 CTCF SIN3A CEBPG RAD21 TEAD3 GATA3 ZNF444 HLF ELF1 GSAP PTPN12 GC07M077424 GCNT1P5
GH07I077420 Enhancer 0.4 FANTOM5 dbSUPER 0.8 +3.1 3107 0.1 GSAP PTPN12 GC07M077424 LOC101927243
GH07I077442 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -19.8 -19796 2.8 JUND JUN GSAP PTPN12 GC07M077424 GCNT1P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07M077424 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07M077424 Gene

Genomic Locations for GC07M077424 Gene
chr7:77,423,684-77,423,788
(GRCh38/hg38)
Size:
105 bases
Orientation:
Minus strand

Genomic View for GC07M077424 Gene

Genes around GC07M077424 on UCSC Golden Path with GeneCards custom track

GC07M077424 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M077424 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M077424 Gene

Proteins for GC07M077424 Gene

Post-translational modifications for GC07M077424 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M077424 Gene

Domains & Families for GC07M077424 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M077424 Gene

Function for GC07M077424 Gene

Phenotypes From GWAS Catalog for GC07M077424 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M077424 Gene

Localization for GC07M077424 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M077424 Gene

Pathways & Interactions for GC07M077424 Gene

SuperPathways for GC07M077424 Gene

No Data Available

Interacting Proteins for GC07M077424 Gene

Gene Ontology (GO) - Biological Process for GC07M077424 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M077424 Gene

Drugs & Compounds for GC07M077424 Gene

No Compound Related Data Available

Transcripts for GC07M077424 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M077424 Gene

No ASD Table

Relevant External Links for GC07M077424 Gene

GeneLoc Exon Structure for
GC07M077424

No data available for mRNA/cDNA for GC07M077424 Gene

Expression for GC07M077424 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M077424 Gene

Orthologs for GC07M077424 Gene

No data available for Orthologs and Evolution for GC07M077424 Gene

Paralogs for GC07M077424 Gene

No data available for Paralogs for GC07M077424 Gene

Variants for GC07M077424 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07M077424 Gene

Disorders for GC07M077424 Gene

No disorders were found for GC07M077424 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M077424 Gene

Publications for GC07M077424 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1

Products for GC07M077424 Gene

Sources for GC07M077424 Gene

Content
Loading form....